Limosilactobacillus reuteri I5007: LRI_1165
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Entry
LRI_1165 CDS
T02701
Name
(GenBank) RNA polymerase sigma-43 factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lrt
Limosilactobacillus reuteri I5007
Pathway
lrt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lrt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LRI_1165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrt03021
]
LRI_1165
Transcription machinery [BR:
lrt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LRI_1165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
ComGF
Exonuc_VII_L
MeaB
DBD_HTH
Motif
Other DBs
NCBI-ProteinID:
AGN99374
UniProt:
R9WGW4
LinkDB
All DBs
Position
complement(1187104..1188246)
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AA seq
380 aa
AA seq
DB search
MAKSKKKDIVISNSADFDQQEYDTAVGKLIRNYKKQKQIEYDELTTKIAKPFELNADGID
NLLQNIEDAGISVVDENGDPDPRALKATEKLSQSAIKDTSAPTGVKINDPVRMYLKEIGR
VNLLTADEEVQLALRIEKGDEVAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGL
MKAVEKFDYRRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQ
DLGREPLPEEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPA
DHAAYEMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEA
KALRKLRHPSRSKQLKDFLE
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaagcaagaaaaaagacattgttatttctaacagcgccgatttcgaccaacaa
gaatatgacaccgcagttggtaagttaattcgtaattacaagaagcaaaagcagattgaa
tacgatgaattaactactaaaattgctaaaccatttgaattgaacgctgatgggattgat
aatttacttcaaaatattgaagatgccggaattagtgttgtcgatgaaaatggagatcca
gatcctcgtgctttaaaagctactgaaaaattatcacaatctgccataaaggatacatca
gcaccaactggggttaaaattaatgatcctgtgcggatgtatttgaaagaaattggtcgt
gtaaaccttttgacggctgatgaagaagtccagcttgctttacggattgaaaaaggtgat
gaagtagctaaacaagaactagctgaggcaaacttacggttagttgtttcaattgcaaag
cgttatgttggccgtgggatgcagtttcttgatttaatccaggaaggtaacatgggactt
atgaaagccgttgaaaaattcgattaccggcgaggatttaagttctctacttatgctacc
tggtggattcgtcaggctattacacgggcgattgctgatcaagcacggacaattcggatt
ccggttcatatggttgaaactattaacaaattaatccggattcaacggcaattacttcaa
gatttaggtcgtgaaccgttaccagaagaaattggtgcagaaatggatatgccaactgag
aaagtgcggaatattcttaaaattgcccaagaaccagtttcacttgaaacgcctattggc
gaagaggatgattctcatttaggggactttattgaagaccaagatgcaacgagtcccgct
gaccatgctgcttatgaaatgatgaaaaagcagcttgaaaatgttctggatacattaact
gatcgtgaagagaacgttcttcggcttcgttttggtttagatgatggtcgaacacggacc
cttgaagaagtcggaaaagtcttcggggtaacgcgagaacggattcgtcagattgaagct
aaggcactccgaaaattacgccacccatcacgttctaagcaattaaaagatttcttagaa
taa
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