Limosilactobacillus reuteri I5007: LRI_1235
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Entry
LRI_1235 CDS
T02701
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lrt
Limosilactobacillus reuteri I5007
Pathway
lrt03410
Base excision repair
lrt03430
Mismatch repair
lrt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LRI_1235
03430 Mismatch repair
LRI_1235
03440 Homologous recombination
LRI_1235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrt03400
]
LRI_1235
DNA repair and recombination proteins [BR:
lrt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LRI_1235
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LRI_1235
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LRI_1235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
GDPD_2
Motif
Other DBs
NCBI-ProteinID:
AGN99444
UniProt:
R9WH14
LinkDB
All DBs
Position
complement(1257829..1260156)
Genome browser
AA seq
775 aa
AA seq
DB search
MIDAKFKWELADNAPSLTVDNLEKELGISRILATLLAQQGIDSTEQAKKFFEPSMEEIHD
PTLLHDMDKAVERIEQAVEKQEQITIYGDYDADGITSTSLMYETLLSIGANVNYYVPNRF
TDGYGPNMDAYQRLIDNGTQLFITVDNGVSGKNVINKVMAAGVDVVITDHHELPADLPNA
VAIVHPRYPGSNYPFPDLSGVGVAFKVAWALTGEFPVEELDLVAIGEIADVVNVTDENHA
LISYGIQQLRQGMRPGLAALMKLADIKANNLTDQDIGFGIAPRLNALGRIADANDGVKLL
TSLDENESQKLAKEVDQANKERQNLVAEIMKEAEKQANSSANQQKRTLLIVGKGWHQGVL
GIVASRIMNETGKPTIIASTDQNNPTLIKGSGRSVDSFNLFNALEAHCELFTTFGGHPAA
CGLSFDQKNIVPLQIALEEETGKQKFDPMVKQPLPIAMKLAPADVTQQLYNDIQRVAPFG
PGNMEPVFELNNVKVVDVKTMGQEHQHLKFSIVSDKKNLTVVAFGQGNLATLLSAPTGQI
NLAVKVSLNEWRGKKTVQLMLEDLQINGTVIIDERTNKLTPQLFSSSDYYIVREPRLREN
IAPHVAPGYTLSIEEAIKTDFSGQQVTLVDCPSSEEMLKQIFAEDEGEPATIRLLLYQRK
SAYLAGLPTRNDFAQLYRFIYKQKEIKWPMQAKAVSNHLKINMDRLNLMIQVFSEAGFVT
IKDDVLKFNEPTNKTDLTQTKRYQKQLAQYKVEQQLLFNDAATVAKWLLEYLNLE
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgattgatgcaaaatttaagtgggaacttgccgataatgctccctcattaactgttgat
aatcttgaaaaagagttaggcatttctagaatattggcaaccttattagctcagcaagga
atcgattcaaccgaacaagcaaaaaagttctttgaaccatcgatggaagagattcatgat
ccaaccttattgcatgatatggataaagcagttgagcgaattgagcaggcagttgaaaag
caagaacaaattactatttatggtgattatgatgccgatggaattactagcacatcctta
atgtatgaaacgctattatctatcggtgctaatgttaattattatgtgccaaatcgtttt
acagatggatatgggcctaacatggatgcttaccaacggcttattgataatggtacccag
ctttttattacggtggataatggcgttagcggaaaaaatgttatcaataaggtaatggca
gcaggagtagatgttgtaattactgaccaccatgagttgcctgctgacttgcctaatgct
gttgcgatcgttcaccctcgctatcctggtagtaattatccttttcctgatttgtcaggc
gttggtgttgcatttaaggtagcctgggctttaactggtgagtttcctgttgaagaactg
gacttagttgcaattggggaaatagctgatgtagtaaacgttacggacgaaaatcatgcg
ttaatttcctatggcattcagcaattacggcaggggatgcgtccgggattagcggcttta
atgaagttagctgatattaaagctaacaatctaacggatcaggatattggatttggaatt
gcaccacggctaaatgcgcttggccgaattgctgatgctaatgatggagttaagctgctg
acgagtttagatgagaatgaatcacaaaaattagctaaagaggtagatcaggctaataaa
gaacgtcagaacctagttgctgagattatgaaagaagcagaaaaacaggctaatagctca
gctaaccagcagaaaaggaccttattaattgttgggaaaggttggcatcaaggtgtatta
ggaattgttgccagtcggattatgaatgagaccggaaagccaacgattatcgcatcaact
gatcaaaataatccgaccttaataaaaggatctggtagaagcgttgacagttttaatttg
ttcaatgccttggaggctcattgtgaactatttacaacatttggtgggcaccctgctgct
tgtggtctttcttttgatcagaaaaatattgtacctctgcaaatagccttggaagaagaa
acaggcaaacaaaaatttgatccaatggtaaagcaacctcttccaatcgcaatgaaactt
gcaccagctgatgttacccaacagttatataacgatattcaacgggttgctccatttggt
ccaggaaatatggaaccggtttttgaattaaataacgttaaagttgtcgatgtcaaaaca
atgggacaggaacaccagcatttaaaattttcgattgtaagtgataagaaaaatctaaca
gtcgtcgcttttggtcaaggaaatttagcaacactattatccgcaccaaccggacaaatt
aatttagccgttaaagttagccttaatgagtggcgtggaaagaaaaccgtacagctgatg
ttagaagaccttcaaatcaatggaacagtaattattgatgaacgaacgaataaactaact
cctcagctttttagttcttcagattattacattgtaagagagccaagattgcgcgaaaat
attgctccccatgtggctcctggctatactttatcgatcgaagaagcaattaagactgat
ttttctggtcaacaagtaacgctggttgactgcccatctagtgaagaaatgctaaaacag
attttcgcagaggatgaaggagaaccagcaactattcgcttattactgtatcagcgaaaa
agtgcctatttagctgggcttccgacacggaatgattttgcacagctttatcgatttatt
tataagcaaaaagaaataaaatggcccatgcaagctaaagcagttagcaatcatttaaag
attaatatggatcgattaaatctaatgattcaagtgttttctgaagcaggatttgttaca
ataaaagatgacgtgttaaagtttaatgagccaactaataagactgatttaacgcaaact
aaacgttatcaaaaacaattagcacaatataaagttgaacaacagttgctttttaatgat
gcggcaacggttgctaaatggctattggaatatctaaatttagaataa
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