Limosilactobacillus reuteri I5007: LRI_1257
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Entry
LRI_1257 CDS
T02701
Name
(GenBank) metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lrt
Limosilactobacillus reuteri I5007
Pathway
lrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRI_1257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrt03019
]
LRI_1257
Messenger RNA biogenesis [BR:
lrt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LRI_1257
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AGN99466
UniProt:
R9WHK9
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All DBs
Position
complement(1279620..1281401)
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AA seq
593 aa
AA seq
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MDNNIKIIPFGGVRENGKNMYAVEIEDQIFILDTGLKYPENELMGIDVVIPDWEYLREHK
DKIVGVFLTHGHADSIGALPYFLMDFNVPVFGSEMTIALAKLAVKSHKEVKKFNDFHVVD
ASTAIDFNDVTVSFFQTTHTIPETLGVVLETRAGNIVYTGDFKFDQTAKKGYQTDLARLA
EIGSQGVLALLSDSAGAGITGASAREQDIGDYIKETFKYQNGRIIVASVASNIMRVQQII
NAAVAVGRKIVLSGKDIEQIIDTAMSLGKLHLPDDLFISRKEAEKLEPNQVVILETGKMG
EPIKSLQQIANGDNPNLQLTDTDLVFVTTTPSYAQETEVQKTKDMIYRTGAEVKFISDDL
NPSGHANQNDEQLMLNFMKPKFFIPIQGEYRLLDRHAELAEEVGVPKENIFLVNKGDVLT
YKNGKFHVGEHIDVSNTMIDGTGVGDIGNIVLRDRRVLSEDGIFVVVATIDRKKKKIVAR
PQITSRGFVFVKTNRQLMQQSADLVEKIVQENLDQKEFDWSHLKQDVRDKLNRFLFDQTK
RHPVILPVIMEINQHQKKIKNNVEKKEEKSAKPRSMKEHHRGRGKKRMAKEKK
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggataataatattaaaattattccttttggtggtgtacgcgaaaatggtaaaaatatg
tacgccgttgagattgaagaccaaattttcattttggatacaggattaaagtatccggaa
aatgaattaatgggaatcgatgttgtcattcctgactgggaatatcttcgtgagcataag
gacaagatagtcggggtattcttaacacatggacatgcagattcaattggggcacttccg
tatttcttgatggactttaatgttccggtatttggaagcgagatgacgattgccttagca
aaactggcagttaaaagccataaggaagttaagaaatttaatgattttcatgttgttgat
gcttcaacagcaattgattttaatgatgttacagtttcgttcttccagacgacccatact
attcctgaaactttaggggttgttttagaaactagagcaggaaatattgtttacactggt
gattttaaattcgatcagacagctaaaaagggttatcaaacagaccttgctcgtttagca
gaaattggatcacaaggtgtattagcacttttaagtgattctgctggtgctggaattacg
ggtgcgtctgctcgtgagcaagatattggggactacattaaagaaacatttaaatatcaa
aacggtcggattattgttgctagtgtagcttcaaacattatgcgtgtacagcagattatc
aatgctgctgttgccgttggtcggaagattgttttatctggtaaagatattgaacaaatc
atcgatacagcaatgtctttgggaaagctgcacttaccagatgacttattcattagtcgc
aaggaagcagaaaaactcgaaccaaatcaagttgttattttggaaactggtaaaatgggt
gaaccgattaagtcattacagcaaattgcaaacggtgataatcctaatttacaattaaca
gataccgatcttgtctttgttactactactccttcttatgctcaggaaactgaagtacaa
aagacaaaggacatgatttatcgtacaggagcagaagttaagtttatttctgatgattta
aatccttctgggcatgctaaccaaaatgatgaacagttaatgttgaatttcatgaagccc
aagttcttcattccaattcaaggtgaatatcgactgttagatcgtcatgcagaattagca
gaagaagtaggagttccaaaagaaaatatcttcctcgttaataagggagatgttctaact
tacaaaaatggtaaattccatgttggtgaacatatcgatgtaagcaatactatgattgat
ggtacaggcgtcggtgatatcggtaatattgttttacgagatcgacgtgtcctatcagag
gatgggatttttgttgtggtagcaactattgatcggaaaaagaaaaagattgttgctcga
ccacaaattacgtcacgaggattcgtgtttgtaaagactaaccgtcaactaatgcaacag
agtgctgacttagttgaaaagattgttcaagaaaacctggatcaaaaagaatttgattgg
agtcacttgaaacaagatgttcgtgataaattaaaccggttcttgtttgaccaaactaaa
cggcatccagttattttgccagttattatggagattaatcaacatcaaaagaagattaaa
aataatgttgagaaaaaagaagaaaaatctgcaaaaccacgttcaatgaaagaacatcat
cgtggtcgtggtaaaaagcgaatggcaaaagaaaaaaagtag
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