Limosilactobacillus reuteri I5007: LRI_1384
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Entry
LRI_1384 CDS
T02701
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lrt
Limosilactobacillus reuteri I5007
Brite
KEGG Orthology (KO) [BR:
lrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrt03019
]
LRI_1384
03009 Ribosome biogenesis [BR:
lrt03009
]
LRI_1384
Enzymes [BR:
lrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LRI_1384
Messenger RNA biogenesis [BR:
lrt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRI_1384
Ribosome biogenesis [BR:
lrt03009
]
Prokaryotic type
rRNA helicases
LRI_1384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AGN99593
UniProt:
R9WIT4
LinkDB
All DBs
Position
complement(1407260..1408633)
Genome browser
AA seq
457 aa
AA seq
DB search
MSDKKFADFQLQPYLLTAIQKINFRQPTPVQQRVIPVIMAGRSVVGQSATGSGKTHAFLL
PIFSKINPEDQTVQAVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQ
LSRKQPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHFPDD
LQMMVFSATIPQKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQDRNQLIYRLL
TLGEPYLALVFANTKERAVELTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQYVV
ATDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAITLYEPAEDDLIAKL
EERGVKFVPKELKNGQLVTTHDRNRRKHYKRRQNELDPSMKGYVKKTKKKVKPGYKKRIK
KAIKEDEQQKRKLELRHKIRKAKRACQKQHRRERNAR
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataaaaaatttgctgattttcagttgcaaccttatctgttaacagcaattcaa
aaaattaattttcgtcaaccgacaccggtccaacaacgagtaataccagtgattatggcg
ggaagaagtgttgtgggacaatccgcgaccggtagtggaaaaacacatgccttcctctta
ccgattttttcaaagatcaatccagaagatcaaaccgttcaagcagtaattacaactcct
agtcgggaattagcataccaaatttataatgcggcaaagcaacttaacaaatatgctcct
catcctcttaccattcacaattatgtcggtggtacagataagcagcatcaagttgaccaa
ttaagccgaaaacaacctcaattggtcattggaactccaggaagagtattggatttaatc
aagagtcaggcattggatattcacacagcgaaaatgtttgtggtggatgaagcggacatg
accctagatatgggattcttacatgaagttgaccaaattgccagtcattttcctgatgac
cttcaaatgatggttttctcagcaacgattccgcagaaactgcgcccattcttaaaaaag
tatatggaaaatccagttgttgaagagattcctactgaagcagtaattaatccggacgtt
gataattggttaatgtcaactaaggggcaggatcgtaaccagctaatttatcgtttgctg
actcttggtgaaccatatcttgcgttggtatttgctaatacaaaagaacgagcagtcgaa
ttaacccagtacttagaaaatcaagggctcaaagtagcaatgattcatgggggactagaa
gctcgtcgtcgtaaacggacaatgcggcaaatccgtgatcttgaatatcaatatgttgta
gcaactgatctagcagctcgtggaattgatattgatggagtatcactagtaattaatgat
gacttgccaactgatcttgaatattttgttcatcgagttggtcgtacaggacgaaatggg
atgaagggaacagccatcaccctatatgagccagcagaagacgatttaattgctaagctt
gaggagcggggagttaaatttgtaccaaaagaattaaagaatggtcaactagtaactacc
catgaccgtaatcgccggaagcattataagaggcggcaaaatgaacttgatccgtcaatg
aagggttacgtaaaaaagactaagaagaaggttaaacctggttataagaaacgaattaaa
aaggcgattaaagaagacgaacaacaaaaacggaaacttgaattacggcataagattcgg
aaagctaagcgtgcctgtcaaaagcaacatcgccgtgaacgaaatgcccgttga
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