Limosilactobacillus reuteri I5007: LRI_1695
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Entry
LRI_1695 CDS
T02701
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lrt
Limosilactobacillus reuteri I5007
Pathway
lrt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LRI_1695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrt03400
]
LRI_1695
Enzymes [BR:
lrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRI_1695
DNA repair and recombination proteins [BR:
lrt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LRI_1695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
SNF2-rel_dom
UB2H
RecG_dom3_C
ERCC3_RAD25_C
CdvA
Motif
Other DBs
NCBI-ProteinID:
AGN99904
UniProt:
R9WI99
LinkDB
All DBs
Position
complement(1740212..1743751)
Genome browser
AA seq
1179 aa
AA seq
DB search
MVQIENLIEKTPSFKQITADLQPKNHQLITGISGSARTELLSALSKEGQQPILVVTDTIS
HMQELASDLENLLPANRVYQFPVEEVLAAEVATSSPNYRLQRVLALNALINREPTVVVAS
AAGLRRNIISPEYFAQSSLKIKTGGEVDPAKIRQQLSAMGYQYQKMVLRPGDFAIRGSII
DIYALNTDNPVRIDLFDTEVDSLRYFDASTQRSIDNVEEVQILPATDFIIPATEFSRVYE
ALDTEYKKVVKELSADDADIKQQVANRFEPLLNALKNQHLPNELLEFSNLVYPAKHSLFD
YLPDDGTIYFDDLTRIKQFAKQMTQEDVGWFKDKVAHHQLTDVPDLSNDVSTIIKKDLHP
QIYGALFKKGLGNIKLSQITDLKSRTMQRFFGQMPLLKAELQRWIDQGQTVVLMANSPER
RKQIAQTLADFDITATETELTNIKPNVVQIVAANLNNGFEMPLAGLVVITESEMFKQVKK
VHHRPQKLANAERLKNYTDLKPGDYVVHVNHGIGIFSGIKTMEVDHVHQDYMIINYRDNA
QIYVPVTQLNLVQKYVSSESKTPHINKLGGNEWAKTKRRVSSKIEDIADELVDLYAKREA
EKGYAFPKDDYLQKQFDANFPYNETRDQLRSIDEIKEDMEKPKPMDRLLVGDVGYGKTEV
AMRAIFKAVTGGKQVAFLVPTTVLAQQHYNTLMRRFEGFPINIALMSRFKTPKELKETEA
GLKDGSVDVVVGTHRILSKDVEFKDLGLLIVDEEQRFGVKHKEKLKQLKNNVDVLTLTAT
PIPRTLHMSMLGVRDLSVLETPPAGRYPIQTYVMEQNSGAIRDGIIREMQRGGQVYYLHN
RVHDIEETVAWLQELVPEARIGYINGQMSENELETVLYEFIQGNYDVLVTTSIIETGVDI
PNANTLFVENADRMGLAQLYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFT
ELGSGFKIAMRDLAIRGAGNLLGKQQHGFIDSVGYDLYSAMLSDAVAKKQGKKQTIHSDA
EVELGVEAYLPTDYIADQRQKIELYKTIRQAKTDEEVIDIQGDLIDRFGDYPAPVGTLLL
VSQLKNHADLAMIAEIKRQRDNINIKFTERASRLIKAPAIIKELANTRFKATIGEDDQQL
TIRLVIQPKMTTDDWLHQLLQFITALGNVIQADEKGAEK
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggtgcagatagaaaatttaatcgagaagacgccatcatttaaacaaattacggctgac
ctccaacccaagaaccatcaattgataacggggatttctggatcggcacgaactgaatta
ctaagtgctctttctaaagaagggcaacaaccaattctggtagtgaccgacacaatttcc
catatgcaggaattagctagtgatttagagaaccttcttcctgctaaccgtgtttaccag
tttccggttgaggaggttttagcggcagaagtagcaactagttctcctaactatcgtctt
cagcgggtactggctttaaatgcgttgattaatagagaaccgacagttgtggttgcatct
gccgcgggattacggcgcaatattatttcaccggaatactttgctcagtcctcgttaaaa
attaagaccggcggggaagtggatccagctaaaatccggcagcagttaagcgcaatgggg
taccaatatcaaaaaatggttttgcgtcctggtgattttgcaattcgtgggtcgattatt
gatatctatgccttaaatactgataatccggttagaattgatctctttgatacagaagtt
gattcgctccggtattttgatgctagtacccagcgaagtattgataatgttgaagaagtt
caaatactgccagcgacagactttatcatcccagcgacagaattttcgcgggtgtatgaa
gcacttgatactgaatacaaaaaggtagtgaaagaattaagtgctgatgatgctgatatt
aaacagcaggtggctaaccgctttgaaccattattgaacgcacttaagaaccagcacttg
cctaatgaacttttagaatttagcaacctggtttatccggctaagcattccttatttgat
tatcttcctgatgatgggacaatttactttgatgatttgacgcggataaagcaatttgcc
aagcagatgactcaagaagatgtaggctggtttaaagataaggttgctcaccatcaatta
acggatgttccagatcttagcaatgacgtatcgaccataataaaaaaagacctgcatccg
caaatttatggcgccctatttaaaaaaggtctcggtaatattaaacttagccaaattacc
gacctaaaaagcagaaccatgcaacgtttctttgggcaaatgccactactgaaagccgaa
cttcaacggtggattgatcaagggcaaacggtagtcctgatggctaatagtccagaacga
cgaaagcaaattgcccaaacgcttgctgactttgatatcaccgcaacagaaactgaatta
acgaatatcaagccgaatgttgttcaaattgttgctgctaacttaaacaatggatttgaa
atgccgcttgctgggctagttgttattacggaaagcgagatgtttaagcaggtaaagaaa
gttcatcatcgtccacaaaaacttgccaatgccgaacgattaaaaaattatactgacctt
aaaccaggtgactatgtagttcatgtcaatcatggaattgggatttttagtggaattaag
acgatggaagttgaccatgttcaccaagactacatgatcataaattaccgggataatgct
cagatatatgtgccagtaacccagctaaatcttgtccaaaagtatgtatcatcagaatct
aagaccccgcatatcaacaagcttggcggtaacgaatgggcaaagactaaacggcgcgtt
tcttcaaaaattgaagatatcgctgatgaattagttgacttatatgctaagcgagaagcg
gagaaggggtatgcttttccgaaagacgattatctccaaaaacaatttgatgctaatttc
ccatataatgaaactcgtgatcagttgcgaagtattgatgaaattaaagaagatatggaa
aagccaaagccgatggatcgactattggtaggggatgtcggctatggtaaaaccgaagtt
gcaatgcgagcaatttttaaggcagtcactggcgggaagcaggttgccttcttagtacca
acaactgttcttgcccagcaacattacaacaccctcatgcgccggtttgagggattccca
atcaacattgccttgatgtcacgttttaaaacgccaaaagagctcaaagagacagaagca
gggctaaaggatggaagtgtcgatgtcgttgtcgggactcatcgaatcctatcaaaagat
gttgaatttaaggaccttgggctgttaattgttgatgaggaacagcgatttggggtaaaa
cataaggaaaaactaaaacaattaaaaaataatgttgatgttttaaccttaacggcaacc
ccgattcctcgaactttgcatatgtcaatgctgggcgtacgagacttatcagttcttgaa
acaccacctgctggccgttacccaatccaaacctatgtaatggagcaaaatagtggtgcg
attcgtgatgggattattcgtgaaatgcaacgcggcggacaggtttattaccttcataat
cgcgttcatgacattgaagagacagtggcatggttacaagaacttgttcctgaagcccgg
attggctatattaatggtcaaatgagtgaaaatgaactggagacagtcctctatgagttt
attcaaggaaattacgatgtattagtgactacctctattattgaaacgggggttgatatc
ccgaatgcgaacaccctctttgttgaaaatgctgatcggatggggttagctcagttatat
cagattcgcggacggattggtcgtagtaatcgggtagcttatgcttactttatgtatcaa
cctaataaggtcctaaccgaattaggagaaaagcggctagctgcaattcgtgattttacc
gagttgggatctggatttaagattgcaatgcgggaccttgctattcggggagctggtaac
ctcctggggaaacaacaacatgggtttattgattctgttggttatgacctatattcggcg
atgcttagtgatgcggtagctaaaaagcagggtaagaagcagactattcactccgatgcg
gaagttgagttaggggttgaagcttacctgccaacagattatattgcagatcaacggcaa
aagatcgaattatataagacaattcgccaagctaagacggatgaagaagtcattgatatt
caaggtgacttgattgatcggtttggcgattacccagcaccggttgggacactgttgctt
gtaagccaattgaagaatcatgctgatctggcaatgattgctgagattaaacggcaacgg
gataatattaatattaagtttactgaacgtgctagtcgcttgattaaagcccccgcaata
attaaggagctagctaatacgcggttcaaagcaacaattggtgaggacgatcagcaacta
acgattcggctggttatccaacctaaaatgacaactgatgattggcttcaccagttacta
caatttataacggctttaggaaatgttattcaagccgatgaaaaaggagcggaaaaatga
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integrated database retrieval system
