Limosilactobacillus reuteri SD2112: HMPREF0538_20601
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Entry
HMPREF0538_20601 CDS
T01551
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lru
Limosilactobacillus reuteri SD2112
Pathway
lru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF0538_20601 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lru03021
]
HMPREF0538_20601 (rpoC)
03400 DNA repair and recombination proteins [BR:
lru03400
]
HMPREF0538_20601 (rpoC)
Enzymes [BR:
lru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF0538_20601 (rpoC)
Transcription machinery [BR:
lru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF0538_20601 (rpoC)
DNA repair and recombination proteins [BR:
lru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF0538_20601 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEI56813
UniProt:
F8DN94
LinkDB
All DBs
Position
complement(578702..582337)
Genome browser
AA seq
1211 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKQGLFDERIFGPTKDYEC
ACGKYKRIRYKGRVCDRCGVEVTSAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVLDPGDTPLEKKQLLTEAEYRDKKAEYGDRFKAEMGAAAIQKLLA
DVDLEKEAAELKEELKEATGQKRTRAIRRLDILEAFIKSGNKPEWMVMDVIPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLKLQAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSLKLNQMGLPVP
MALELFKPFIMHELVKRGLSANVKAAKRKIDRSDDDVFDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPILVSGKSMRLHPLVCSAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAHHIL
SPRDGEPIVSPSQDMVIGNYYMTTEDKGREGEGMIFKDTDEAELAYRNDYVSLQTRVGVQ
VSAFPEKPFTDEQRGKIMVTTVGKLLFNRIMPKDFAYINEPTDANIQNGVDDRFFLEPGQ
DIHEYLENAPLVPPFKKGFLSDLIAEVYKRYKVTKTSQFLDRIKDLGYYESTISGLTTAM
SDIHDLPEKPEILDKAQKQVALITKQFRRGLITDDERYERVIGAWNDAKDEVQNKLIEHM
DIHNPINMMSDSGARGNISNFTQLAGMRGLMASPNGKIMELPVKSNFYEGLSVLEMFISS
HGARKGMTDTALKTANSGYLTRRLVDVAQDVVVREKDCGTDRGLEVTAITNGNEMIEPLY
DRIMGRYTMKSVFDPKTGEKIVGKNVLIDEEMAQKIVDAGVKKVTIRSAFTCNTEHGVCE
RCYGRNAATGDRVEAGEAVGTVAAQSIGEPGTQLTLRNFHTGGVAGNDDITQGLPRIQEI
VEARNPKGRATITEVTGEVVSIEENPAERTKDITIKGETDTRTYTLPITARMKVAEGDFI
HRGAPLNEGSIDPKELIQVRDVLSTETYLLSQVQGVYRMQGIDLLDKHVEIMIRQMMRKV
RVMDPGDTDLLPGQLMDISQFRDANKDTLVAGNIPATARPVILGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMSAYRNIKPKEVSVAAYSIKDI
EAKLKEEDKQN
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtcaataaatttgaaagtatgcagatcggtctggcatctccagataagatc
cgtagttggtcatatggggaagttaaaaagcccgagactattaactaccggacattaaag
ccagaaaagcaaggtctgtttgacgaacgaatctttggcccaaccaaggattacgaatgt
gcgtgtggaaagtacaagcgtatccgttacaaaggtcgtgtttgtgaccgttgtggtgtt
gaggttactagtgcaaaagttcgtcgtgaacggatggggcacattgaattagctgctcct
gtatctcacatttggtactttaaaggaattccaagtcgaatgggacttgtattagatatg
agcccacgttcacttgaagaagttatttactttgcttcatatgttgttcttgacccaggt
gatactccacttgaaaagaaacaacttttaactgaagctgaatatcgtgataaaaaagca
gaatatggtgaccgtttcaaagctgaaatgggagctgctgctattcaaaaacttttagct
gatgttgacttagaaaaggaagctgctgaattaaaagaagaattgaaagaagctactggt
caaaaacggactcgtgctattcgtcgtcttgatattcttgaagctttcattaagtcagga
aacaagcctgaatggatggttatggatgtaattccagttatgccacctgacttgcggcca
atggttcaacttgaagggggacgttttgctacctccgatttgaacgatttatatcggcgg
gttattaaccgtaataaccggttaaagcgacttcttaaattacaagcacctggaattatt
gttcaaaatgaaaaacggatgctacaagaagctgttgatgcattaattgataacgggcgc
cgtggacgtccagtagctggaccaggtaatcgtccattgaagtcactttctcacttactt
aagggtaagcaaggacgtttccgtcaaaacttacttggtaagcgtgttgactactctggc
cgttccgttattgatgttggtccatcattgaagttgaaccaaatgggattaccagttcca
atggcacttgaattatttaagccatttattatgcatgaattggtaaagcgtggtctttct
gctaacgttaaagctgctaagcgtaagattgatcgcagtgatgatgatgtctttgatgta
ttggaagacgttattaaggaacacccagttctattaaaccgggcacctactcttcaccgg
ttaggtatccaagcgtttgaaccaatcttggtttctggtaagtcaatgcgtcttcaccca
ttagtatgttcagcatataacgctgactttgatggggatcagatggctattcacgttcca
ttatctgatgaagctcaagcggaggcacgtttgttaatgcttgctgctcaccatattctt
agtcctcgtgacggagaacctattgtttcaccatcacaggatatggttattggtaactac
tacatgactactgaagataagggtcgtgaaggtgaaggaatgatcttcaaggatactgat
gaagctgaacttgcttaccgcaatgactatgtttcattacaaacccgtgttggagttcaa
gtatctgcattccctgaaaagccatttactgatgaacaacgaggcaagatcatggtgaca
actgttggtaagcttcttttcaatcgaattatgccaaaagattttgcttatattaacgaa
ccaacagatgcaaatattcaaaatggtgttgatgatcgtttcttccttgaacctggtcaa
gatattcatgaataccttgaaaatgcaccattagttccaccatttaagaagggcttctta
tctgacttgattgctgaagtatacaagcgttacaaagttacgaagacttctcaattcttg
gaccgtattaaggacttaggttactacgaatcaactatttctggtttaacgactgctatg
tctgatattcatgatttgccagaaaaaccagaaattcttgataaggcacaaaagcaagtt
gctttaattactaagcaattccgtcgtggtttaattacagacgatgaacgttatgaacga
gtaatcggtgcatggaacgatgctaaggatgaagttcaaaacaagttaattgaacacatg
gatatccataacccaattaacatgatgtccgactctggtgcgcggggtaacatttcaaac
tttactcagttagccggaatgcgtggattgatggcatcaccaaacggtaagattatggaa
ttacctgttaagtcaaacttctatgaaggactttcagtgttggaaatgtttatttcatca
cacggtgctcgtaaaggtatgactgatacagccttgaagactgccaactcaggttactta
actcgtcgtctggttgatgttgcgcaggatgtggttgttcgtgaaaaagactgtggtact
gatcgtggacttgaagttactgctattacaaacggtaacgaaatgattgaaccgctttat
gatcgaatcatgggccgttacactatgaagtctgtctttgatcctaagactggtgaaaaa
attgttggtaagaatgtccttatcgacgaagaaatggctcaaaagattgttgatgccggc
gtaaagaaagtaactattcgttcagcatttacttgcaacactgaacatggtgtatgtgaa
cgttgttatggacgaaatgcagctactggtgaccgtgtagaagctggtgaagctgtcgga
actgttgccgctcaatcaattggtgaaccaggtactcagttaacccttcgtaacttccac
actggtggggttgctggtaacgatgatattactcaaggtcttccacgtatccaagaaatt
gttgaagcacgtaatcctaaaggtcgggcaacaattacagaggttactggtgaagttgtg
tctatcgaagaaaatcctgctgaacggacgaaggatattacgattaagggtgagactgat
acccgaacttacacccttccaattacagcacggatgaaagttgctgaaggtgatttcatt
caccgtggggcaccgctaaatgaaggttcgattgatcctaaggaattaatccaggttcgt
gatgttctttctactgaaacttacctcttatcgcaagttcaaggtgtttaccggatgcag
ggtattgacttgttagataagcacgttgaaattatgattcgtcaaatgatgcggaaagtt
cgtgtcatggatccaggtgataccgaccttctaccgggtcaattgatggatatcagtcaa
ttccgtgacgctaacaaggataccttagttgctggaaatattcctgcaacagctcgtcct
gttattcttggtattactaaggctgccttagagacaaacagtttcttgtccgctgcttca
ttccaagaaactacacgtgtattaaccgatgctgctattcgtggtaagaacgatccgttg
gttggattgaaagaaaatgttattattggtaagattattcctgcaggtactggtatgagt
gcttaccggaacatcaagccaaaagaagttagtgtagctgcttactcaattaaagatatt
gaggctaagttaaaagaagaagataagcaaaactaa
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