Limosilactobacillus reuteri SD2112: HMPREF0538_20789
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Entry
HMPREF0538_20789 CDS
T01551
Name
(GenBank) putative helicase IV
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lru
Limosilactobacillus reuteri SD2112
Pathway
lru03420
Nucleotide excision repair
lru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF0538_20789
03430 Mismatch repair
HMPREF0538_20789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lru03400
]
HMPREF0538_20789
Enzymes [BR:
lru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0538_20789
DNA repair and recombination proteins [BR:
lru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF0538_20789
MMR (mismatch excision repair)
Other MMR factors
HMPREF0538_20789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C_2
AAA_19
UvrD_C
Viral_helicase1
AAA_30
PhoH
SLFN-g3_helicase
Catalase_C
DEAD
AAA_16
NACHT
YflT
AAA_12
XhlA
NPHP3_N
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AEI57000
UniProt:
F8DP84
LinkDB
All DBs
Position
complement(782210..784537)
Genome browser
AA seq
775 aa
AA seq
DB search
MKGREYGMSTKTEKELEQKYLDNVIDKVKQAEQKAEEKIKTAQHDIKGINKQIDDIHLNT
TTYSGMMDTAMSFRAQQQMLDERQNSWQHAADRLATLQRLEKKPYFARIDFREKGANESE
KVYIGLASFTDKPDHFLVYDWRAPISSVYYEGKLGKVKYQTPVGEQEVDLTLKRQFQIKD
GVIVTIFDTDEQVGDQMLLDALGNHSSTKMKSIVTTIQRKQNEIIRDTKNELLFVQGAAG
SGKTAAVLQRVAWLLYRYRGNLTSSQVVLFSPNQLFNDYIDQVLPELGEHNMVQMTYFQF
ANRRVPKLHVQNLEQRFESHQDETAKNAQQLLTSLQYFKATERYANHLGHANMRFRNLMF
NGKVFLSKEKIKEIYYSFNNNYNLGNRLDGTKEALIKYLNHRVGSEMRNKWVEDEIQSLS
KEEIDNLFNNQPREFEDEDKEYKFLARQIVMRAFMPIKKAIDHNQWLNINGQFLHLLRVT
PKLVNIAEYGISAEQWKGYVDGIKEELKKGNISANGITIYLYLYDLITGKRGQRDIRYVF
VDEVQDYDAYQLAYLKYRFPRAKFTLLGDLNQAIFTHENSRSLLKQLGTMFDPEKTKVVQ
LTKSYRSTKQITDFTKHILIDGEAIEAFEREGNKPQVYQTKDEQEGVAAVINILNKYQND
HDAVAIIGKDLKDSEELYQKLNANNIKTTVIRTENQRLVKGPIVVPSYLAKGLEFDAVIV
WNANDQQYHGNDERQLLYTICSRAMHELSLVSIGRTTSLLNQVPTDEYEKVNVDK
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtagggagtatggaatgtctacgaaaactgaaaaagaactagaacaaaagtac
cttgataatgtaattgataaagtaaaacaggccgaacaaaaagcagaagaaaagattaaa
acggctcaacatgatattaagggcatcaataagcaaattgatgatatccacttaaatacc
actacttattcaggcatgatggatacggccatgtcttttcgtgcccaacagcagatgcta
gatgaacgtcaaaatagctggcaacacgctgcagaccggctagcaactttacagcgactt
gaaaagaaaccttactttgctcgcattgattttcgtgaaaaaggcgccaatgaatccgaa
aaggtatatatcgggcttgcatcttttaccgataagccagatcactttcttgtttatgac
tggcgagcaccgatttcgtctgtttactatgaaggaaagctcgggaaagttaagtaccag
actccggtaggtgaacaagaggttgatcttactcttaagcgccaattccaaattaaagat
ggcgtgattgtaaccatctttgataccgacgaacaagtaggcgaccagatgcttcttgat
gctcttggtaaccattcaagtaccaagatgaagagcattgtaacgacgattcaacggaaa
caaaatgaaattattcgtgacactaaaaatgaattgttgtttgttcagggggctgctggc
tcgggaaagacagctgcagttctccaacgggttgcctggcttctttaccgttaccggggg
aatttgacctcttcacaagttgttcttttttcacctaaccaattatttaatgactacatt
gatcaagttttaccggaattgggtgagcataatatggtccagatgacttacttccagttt
gctaatcgtcgggtaccaaagcttcatgttcaaaacttagaacaacggtttgaaagtcac
caagatgaaacggctaagaatgcacaacaactattaactagcttacaatatttcaaagca
acagagcgttatgctaaccatcttggtcatgctaatatgcgtttccgcaaccttatgttt
aatggtaaagtctttttgagcaaagagaagattaaggagatttactactcatttaacaat
aactataacctgggaaataggttggatggaacgaaagaagctcttattaaataccttaat
caccgtgttggatctgaaatgcgcaacaaatgggtagaggatgaaatccaaagcttgagt
aaagaagaaatcgacaacctatttaataaccagccacgtgaatttgaggatgaagataaa
gaatacaagttccttgcgcgtcaaatcgttatgcgggcatttatgccaataaaaaaagcc
atcgatcataatcagtggcttaacatcaatggacaatttttacaccttctccgggtaact
ccaaaacttgttaatattgctgaatacggtatttctgcagagcaatggaaaggttatgtt
gatgggataaaagaagagctaaagaagggaaatatcagtgccaacggaattaccatttac
ctgtacctgtatgatttgattactggaaagcgtggtcaacgtgatattcgttacgttttt
gttgatgaagttcaagattatgatgcttaccagttagcttaccttaaatatcgttttccc
cgtgctaaattcacattgttaggagaccttaaccaggcgattttcactcatgagaatagt
cggtcactattaaagcagttagggacgatgtttgatccagaaaagacgaaggttgtccaa
ttaactaagtcttaccgttccacgaaacaaattaccgactttactaagcatattttaatt
gacggtgaagcaattgaggcctttgaacgtgaaggcaataagccacaagtttatcaaact
aaggatgaacaagaaggggtagcggcagttattaatattcttaataagtatcagaatgac
catgatgccgtcgcaattattggtaaagatctcaaagacagtgaagagttgtatcaaaag
ttaaatgccaataatatcaagaccaccgttattcggacagagaatcaacggttagtaaag
gggccaattgttgtgccgtcatatctagcaaaagggttggaatttgatgcggttattgtc
tggaatgcgaatgatcagcaataccatggtaacgatgagcgacaattgctatatacaatt
tgttctcgagcaatgcatgagttaagcttagtatcaattggcaggacaactagtttgctg
aaccaagtgccgacagatgaatatgaaaaagttaatgttgataaataa
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