Limosilactobacillus reuteri SD2112: HMPREF0538_21377
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Entry
HMPREF0538_21377 CDS
T01551
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lru
Limosilactobacillus reuteri SD2112
Pathway
lru03420
Nucleotide excision repair
lru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF0538_21377
03430 Mismatch repair
HMPREF0538_21377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lru03400
]
HMPREF0538_21377
Enzymes [BR:
lru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0538_21377
DNA repair and recombination proteins [BR:
lru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF0538_21377
MMR (mismatch excision repair)
Other MMR factors
HMPREF0538_21377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C_2
AAA_19
Viral_helicase1
UvrD_C
AAA_30
AAA_16
SLFN-g3_helicase
NACHT
DEAD
DUF3828
RNA_pol_Rpb1_3
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AEI57587
UniProt:
F8DKW8
LinkDB
All DBs
Position
1388956..1391274
Genome browser
AA seq
772 aa
AA seq
DB search
MENHERETEQARVDNVEKQIDQQIAATTKAVEDAHRETRAVERNYSENASINRYEVDDIA
ESRSMIEQQRQLVSRAAESESILKHQLRTLKNLKGSPYFGRIDIQDPGEDKSETLYIGTS
SLMNEDKTDFLIYDWRAPISGVYYNGTLGKVNYETPAGMQTTELKKKRQFTIKDGKITNM
FDTNETVGDEVLQAALGKQNDQYMHNIVATIQKEQNDIIRDTRSDLLLVQGVAGSGKTSA
ILQRIAYLLYHSRTELNADQIVLFSPNNLFSHYISEVLPSLGERNMRQVTLEGFIRRRFE
GLQVETLFDRYEERQKPENASHVVADFIESESFMTSIAHYVEKMTIEDLQFADIRFNGQV
FFSADHVKDLYKELPLTMAPADKLVQLKNKLIRELQRRVKDEAKKDWVAKELDSLDLQQL
HNLCGKKSIDDFKDEDEQYVYLSRRLAKRRLRVIADAIYNNYFLDFYNQYNKFLHQVEVP
KTISQREWATMILAFQDEIEYHRLELMHAAPLMYLRDLISGTGQNRSFQYVFIDEMQDYS
TAMLIYLKHAFPQAKFTVLGDSEQALFKPLQLPEELLNKLSGVLKAKRPNLIALRRSYRS
TTEITNFAKALLPDGDKIISFTRHGKKPRLLVRYSDKESQQSLLDETLKLANEHETVAIL
TKNQEQAVVIYQLLRRQKVENIHLLDKDASELPKGILILPIYLAKGLEFDAVLAADVSAK
NLANTDEVGMIYTMASRAMHELVLLSNGSVSDAINEKAGRLLTIEYQLPNKN
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatcatgaacgagaaacggagcaagcgcgggttgataatgttgaaaaacaaatt
gaccaacagatagctgctaccactaaagctgttgaagatgctcatcgtgaaacacgggca
gttgaacgtaattatagtgaaaatgcatctattaatcgttatgaagttgatgatattgct
gaatctcggtcaatgattgaacagcagcgacaattggtttcacgagcagcggaaagtgaa
tcaattctaaagcaccagttaagaactttgaaaaacttaaaagggtcaccgtattttggc
cggattgatattcaagatcctggtgaagataagagtgaaacgctatacattggtacttct
tctttaatgaatgaagataaaacagactttttaatttatgactggcgggcaccgatttct
ggggtttactataatggtacccttgggaaagtcaattatgaaacgccagctgggatgcaa
accacagaattaaaaaagaaacgccaattcactattaaggatggcaagatcactaacatg
tttgataccaatgaaacggttggtgatgaagttttgcaagcagctcttggaaagcaaaat
gaccagtatatgcataatattgtggcaacaattcaaaaagagcaaaatgatattatccgt
gatacgcgtagtgatcttttgctagtacaaggagtggctggttcaggaaagacttcagcg
atccttcagcgaattgcatacttgctttatcatagtcgaacagaattgaatgcggatcag
attgtcctctttagtcccaataatttatttagccactacatttctgaagttttgccaagt
cttggtgaaagaaatatgcggcaagtaacattagaagggtttatccggcggcgttttgaa
ggcttgcaagtagaaacattatttgatcgctatgaagaacggcaaaaacctgaaaatgct
tctcatgttgttgctgactttattgaaagtgaatcttttatgacgtcaattgcacattat
gtcgagaaaatgacaattgaggatttgcagtttgctgatattcgttttaatggtcaagtt
ttcttttcagctgaccacgtcaaagatctttataaagaattaccattgacgatggctcct
gctgataagttagttcaattgaaaaataagttaattcgtgaattacagcggcgagttaaa
gatgaagctaaaaaagattgggtagctaaagaactggattcacttgatttacaacaattg
cacaatctttgtggtaagaagtcaattgatgactttaaggatgaagatgagcaatatgtt
tacctttcacggcgcttagctaaacgacgcttacgtgtgattgcagatgcgatctataat
aattactttctcgatttttataatcaatataataagtttttgcatcaagttgaggtacct
aagacaattagtcagcgggaatgggcaacaatgattcttgcttttcaagatgagattgaa
taccatcggctggaattaatgcatgcggcacctttgatgtatctgcgtgatttgatttcc
ggtacaggacaaaatcgttcttttcaatatgtatttattgatgagatgcaagattattca
acagcgatgttaatctacttaaaacacgcctttccccaagctaagtttacggtcctcggt
gatagtgaacaggctctttttaagccattgcagttaccggaagagttattaaacaaactt
agtggggtattaaaggctaagcggcctaatttaattgctttacggcgaagttatcgttcc
acgacggagattactaattttgcgaaggccttgttgccggatggagataagataatttct
ttcactcgccatggaaagaaaccacgcttgttagttcgttattctgataaagagagtcag
caaagcttgttagatgagacacttaaactagctaacgaacatgaaactgtagcgatctta
accaagaatcaagagcaagccgttgttatttatcaattacttcgccggcaaaaggttgaa
aatattcatctcttagataaggatgcaagtgaattgccaaaggggatcttaattctccca
atttacttagcaaaaggactcgaattcgatgctgtccttgctgcggatgtctctgctaaa
aacctagctaatactgatgaagtcggtatgatctatacaatggcatcacgggcaatgcat
gaactggtccttttaagcaacggttcagttagcgacgcaattaacgagaaagctgggcgt
cttttaacgattgaatatcaattgccaaataaaaattaa
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