Limosilactobacillus reuteri SD2112: HMPREF0538_21909
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Entry
HMPREF0538_21909 CDS
T01551
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lru
Limosilactobacillus reuteri SD2112
Pathway
lru03410
Base excision repair
lru03430
Mismatch repair
lru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HMPREF0538_21909 (recJ)
03430 Mismatch repair
HMPREF0538_21909 (recJ)
03440 Homologous recombination
HMPREF0538_21909 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lru03400
]
HMPREF0538_21909 (recJ)
DNA repair and recombination proteins [BR:
lru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HMPREF0538_21909 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HMPREF0538_21909 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF0538_21909 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
GDPD_2
Motif
Other DBs
NCBI-ProteinID:
AEI58116
UniProt:
F8DNY0
LinkDB
All DBs
Position
1946767..1949094
Genome browser
AA seq
775 aa
AA seq
DB search
MIDAKFKWELADNASSVTVDNLEKELGISRILATLLAQQGIDSTEQAKKFFEPSMEEIHD
PTLLHDMDKAVERIEQAVEKQEQITIYGDYDADGITSTSLMYETLLSIGANVNYYVPNRF
TDGYGPNMDAYQRLIDNGTQLFITVDNGVSGKNVIDKVIAAGVDVVITDHHELPADLPNA
VAIVHPRYPGSNYPFPDLSGVGVAFKVAWALTGEFPVEELDLVAIGEIADVVNVTDENHA
LISYGIQQLRQGMRPGLAALMKLADIKANNLTDQDIGFGIAPRLNALGRIADANDGVKLL
TSLDENESQKLAKEVDQANKERQNLVAEIMKEAEKQANSSANQQKRTLLIVGKGWHQGVL
GIVASRIMNETGKPTIVASTDQNNPTLIKGSGRSIDSFNLFNALEAHRELFITFGGHPAA
CGLSFDQKNIVPLQIALEEEAVKQKFDPTVKQPLPIAMKLVPADVTQQLYNDIQRVAPFG
PGNMEPVFELNNVKVVDVKTMGQEHQHLKFSIVSDKKNLTVVAFGQGNLATLLSAPTGQI
NLAVKVSLNEWRGKKSVQLMLEDLQINGTVIIDERTNKLTPQLFSSSDYYIVREPRLREN
ITPHVAPGYTLSIEEAIKTDFSGQQVTLVDCPSSEEMLKRIFAEDEGEPATIRLLLYQRK
SAYLAGLPTRNDFAQLYRFIYRQKELKWPMQAKAVSNHLKINMDRLNLMIQVFSEAGFVT
IKDDVLKFNESTNKTDLTQTKRYQKQLAQYKVEQQLLFNDAATVAKWLLEYLNLE
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgattgatgcaaaatttaagtgggaacttgccgataatgcttcctcagtaactgttgat
aatcttgaaaaagagttaggcatttctagaatattggcaaccttattagctcagcaagga
atcgattcaaccgaacaagcaaaaaaattctttgaaccatcgatggaagagatccatgat
ccaaccttattgcatgatatggataaagcagttgagcgaattgagcaggcagttgaaaag
caagaacaaattactatttatggtgattatgatgccgatggaattactagcacatcctta
atgtatgaaacgttattatctatcggtgccaatgttaattattatgtcccaaatcggttt
acagatggatatgggcctaacatggacgcttaccaacgccttattgataatggtacccag
ctttttattacggtggataatggcgttagcggaaaaaatgttatcgataaggtaatagca
gcaggagtagatgttgtaattactgaccaccatgagttgcctgctgacttgcctaatgcg
gttgcgatcgttcaccctcgttatcctggtagtaattatccttttcctgatttgtcaggc
gttggtgttgcatttaaggtggcttgggctttaactggtgagtttcctgttgaagaactg
gacttagttgcaattggtgaaatagctgatgtagtaaacgttacggacgaaaatcatgcg
ttaatttcctatggcattcagcaattacgacaggggatgcgtccaggattagcggcttta
atgaaattagctgatattaaagctaacaatctaactgatcaggatattggatttggaatt
gcaccacggctaaatgcgcttggccgaattgctgatgctaatgatggagttaagctgctg
acgagtttagatgagaatgaatcacaaaaattagctaaagaggtcgatcaggctaataaa
gaacgtcagaacctagttgctgagattatgaaagaagcagaaaaacaggctaatagctca
gctaaccagcagaaaaggaccttattaattgttgggaaaggttggcatcaaggtgtatta
ggaattgttgccagtcggattatgaatgagaccggaaagccaacaattgtggcatcaact
gatcaaaataatccgaccttaataaaaggatctggtagaagcattgacagttttaatttg
ttcaatgccttggaggctcatcgtgaactatttataacatttggtgggcaccctgctgct
tgtggtctttcttttgatcagaaaaatattgtacctctgcaaatagccttggaagaagaa
gcagtcaaacaaaaatttgatccaacggtaaagcaacctcttccaatcgcaatgaaactt
gtaccagctgatgttacccaacagttatataacgatattcaacgggttgctccatttggt
ccaggaaatatggaaccggtttttgaattaaataacgttaaagttgtcgatgtcaaaaca
atgggacaggaacaccagcatttaaaattttcgattgtaagtgataaaaaaaatctaaca
gtcgtcgcttttggtcaaggaaatttggcaacactattatccgcgccaaccggacaaatt
aatttagccgttaaagttagtcttaatgagtggcgtggtaaaaaaagtgtccaactgatg
ttagaagatctccaaattaatggaacggtaattattgatgaacgaacgaataaactaact
cctcagctttttagttcttcagattattacattgtaagagagccaagattgcgagaaaat
attactccccatgtggctcctggctatactttatcgatcgaagaagcaattaagactgat
ttttctggtcaacaagtaacgctggttgactgcccatctagtgaagaaatgctaaaacgg
atttttgcagaggatgaaggagaaccagcaactattcgcttattactgtatcagcgaaaa
agtgcctatttagctgggcttccaacacggaatgattttgcacagctttatcgatttatt
tataggcaaaaagaattaaaatggcccatgcaagctaaagcagttagcaatcatttaaag
attaatatggatcgattaaatctaatgattcaagtgttttctgaagcaggatttgttaca
ataaaagatgacgtgttaaagtttaatgagtcaactaataagactgacttaacgcaaact
aaacgttatcaaaaacaattagcacaatataaagttgaacaacagttgctttttaatgat
gcggcaacggttgctaaatggctattggaatatctaaatttagaataa
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