Limosilactobacillus reuteri SD2112: HMPREF0538_22004
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Entry
HMPREF0538_22004 CDS
T01551
Name
(GenBank) putative DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lru
Limosilactobacillus reuteri SD2112
Pathway
lru03030
DNA replication
lru03430
Mismatch repair
lru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF0538_22004
03430 Mismatch repair
HMPREF0538_22004
03440 Homologous recombination
HMPREF0538_22004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lru03032
]
HMPREF0538_22004
03400 DNA repair and recombination proteins [BR:
lru03400
]
HMPREF0538_22004
Enzymes [BR:
lru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMPREF0538_22004
DNA replication proteins [BR:
lru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMPREF0538_22004
DNA repair and recombination proteins [BR:
lru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMPREF0538_22004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
SSB
HROB
Motif
Other DBs
NCBI-ProteinID:
AEI58211
UniProt:
F8DPF4
LinkDB
All DBs
Position
2040772..2044119
Genome browser
AA seq
1115 aa
AA seq
DB search
MDFTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIK
PILGLRLVVALNETDGTKLDLVFLAKNQRGYQHLMDLSTLQQTRKDKKIPLTIAQISSLL
GELFIIIPPQSTVFSILAQPTSILTELANLGDDDSVLLGVNSRLDDVQIDTLQQLSKQLS
LPLVGTSPVDYLNANDLFASRVLQAIDAGVELKDPTIEARRRGQHYLHSKEQIVQDYNAK
GLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIPSQQYLRSLCIQGLKKRRVAPGKT
IQQYQERLAMELKVIHEMGFDDYFLIVWDVMNFAHQQKITTDPGRGSAAGSLVAYALAIT
EVDPLQYDLLFERFLNPERAQMPDIDLDIPDNRRDEVLQYVHQKYGHQRVAQIITFGTLA
AKQVVRDVSRVFNLPRYDMQRLIDALPHGLHVTLKDALKESQQLKNLLDDNPKFRLLIQV
AQQLEGLPRHYSIHAAGIVLSEQPLHEIVPLQDGSDGLLMTQFAKDTVEALGLLKMDFLG
LKNLSIMDNILQMIRQEDPNFDLQKINFNDPLTLQLFQRGKTEGIFQFESSGIRNVLVNL
HPTNFEDIVAVNALYRPGPMENISHFTARKAGKEKITYPAPSLEKILGPTYGILVYQEQV
MQLASVMAGFTLGEADLLRRAMSKKKKATMEDMRTKFIAGATEHGYSAQVAHQVFEYIDR
FANYGFNRSHAVAYSMMAFEMAYLKVYYPAAFFTALMNAETNIEKLKRHVGDAKQFGVKV
SGPRINISESSFLLHDGTVYFGFSAIKGVRRDFVAAILEERQENGKFTDLRNFIARIPER
WQKQELIEPLIYSGAFDKMEYNRAEMIDALPKLISGIELFAGFANFDDPALQTAIDQRNE
FPLLTRLTKENEYLGVYLSGHPVTQYYQLGQQLHATKIANLYPHSEATIIVLTNHVKTIY
TKREHREMAFVNGTDETGAIDITVFPKQYQQFKEQLETNKILIVRGRVEYREGRGLQLVA
NQLQDVKKVQQKRRKQRWVLRILPSLDTEMVHRELNNIFNEYHGSIPVLLFYPANDKKIL
LDQKRWLKNSQKAKKALVAVLGQENVVLQQLNSNH
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
gtggattttacgcccttagatgttaagagtagttatagtttgctaaaaagtcccacccgg
atttctgacctagttacaacggctaaggaacgagggtataaggcattagcgttaacagac
gaaaatgttttatatggggctgtcgaattttataatgcagcaaaaaaagcaggaattaaa
cccattctcggcttgcggctggtagttgcattaaatgagacggatggtaccaagctagat
ttagtatttctagctaagaatcaacgagggtatcagcatctgatggacctatcgacgctt
cagcaaacacgaaaagataaaaaaatacctttaacgattgcgcaaattagttctttattg
ggtgaattgtttataattatccccccacaaagtacagtttttagtatacttgctcagcca
acatcaattttaactgagcttgctaatctgggggatgatgatagcgttctattaggagtc
aattcgcggttagatgacgttcaaatagataccttgcagcaattatcaaaacaactatct
ttgccattagtagggacgtctccagttgattatttaaatgctaatgacctttttgctagt
cgggttttacaagcaattgatgccggagttgagttaaaagatccgacaatagaagcgaga
cgaagaggacaacattatcttcattcgaaagaacagattgtccaagattacaatgcaaag
gggcttagtgcagccgcgcaaaagacagttgaagtagcagccctgtgcaacgttgaactt
caatttagggccccggtccttcctcattttaaaaatcaagcagggataccatctcaacaa
tatttacgttctctatgtattcaaggattgaaaaaaagacgagtagcaccaggaaaaact
attcaacagtaccaagaacgtttagcgatggaattaaaagtaatccatgaaatgggcttt
gatgattatttcttaattgtatgggacgtaatgaattttgctcaccagcaaaagattacg
accgaccctggacgaggatcagctgcgggatcattagttgcctatgctttagcaattaca
gaagttgatcctttgcaatacgacttattatttgaacgctttctgaatccagaacgagct
caaatgcccgatattgacttagatattcctgataatcggcgtgatgaagttttgcagtat
gtacatcaaaaatatggtcaccaacgcgtagcccaaattattacttttgggacattagcc
gctaaacaagtcgttcgtgatgtgagccgggtctttaacttgccccgttacgatatgcaa
aggttaatcgatgcattaccacatggccttcacgtgacactcaaagatgcattaaaggag
tcacaacaactaaaaaatcttcttgacgataatcctaaatttcgtttgctgattcaagtt
gcacagcaattagagggattgccgcgtcattattcaattcacgcggcaggcattgtcctt
tctgagcagccattacatgaaattgtgccgttacaagatggtagtgatggcttattaatg
acgcagtttgccaaagacacagtagaagcgctggggctattaaaaatggatttcttggga
ttgaagaacctttcaatcatggataacatccttcaaatgattcggcaagaagatcctaat
tttgatttgcaaaaaattaactttaatgatccgttgactcttcaactgttccagcgagga
aaaactgaagggatttttcaatttgaatcaagtgggatcagaaatgtattggtcaatctt
cacccaacgaattttgaagatattgtggcagtgaatgcactttatcgtccgggcccaatg
gaaaatatttctcattttaccgcccgcaaagctggaaaagagaaaattacttatcctgct
ccttcacttgaaaaaattctgggaccaacttacggtattttggtctatcaagagcaggta
atgcagttggcttctgtaatggctggctttaccttaggagaggcggatcttttacgccgg
gcaatgagtaagaagaaaaaggccacaatggaggatatgcggacaaaatttattgccggc
gcaacagaacacggctattcagcacaagttgctcaccaagtatttgaatatatcgatcgc
tttgctaattatgggttcaatcgttcgcatgcagttgcctattctatgatggcgtttgag
atggcatatttgaaagtttattaccctgcagctttttttacagccctaatgaatgcagaa
actaatattgagaaattgaaacggcacgtgggggatgcaaagcaatttggcgtcaaggtt
agtgggccgcgaatcaatataagtgagagtagttttctattacatgatgggacagtttac
tttggcttttctgctattaaaggagtacgtcgtgattttgtcgccgcaattcttgaagaa
cggcaggaaaatggcaagtttacagatcttcgtaattttattgcgcgtattccagaacgt
tggcaaaagcaagaattaatcgaaccgttaatctatagtggggcctttgataagatggaa
tataaccgagcggagatgattgacgcccttcctaaattaatttccgggattgagttgttt
gctggttttgctaattttgacgatccggctctccaaacggcaattgaccaacgaaatgaa
ttccctctgttgacccgtttaacgaaggagaatgaatacttaggagtgtatctttccggc
cacccggttacccaatattaccaattaggacagcagctccatgcaactaaaattgctaat
ttatacccgcattcagaagcgacaataattgtccttacaaatcacgttaagactatttat
actaaacgtgaacatcgagaaatggcctttgttaatggaacggatgagaccggagcaatt
gatattaccgtctttcccaaacaatatcagcagttcaaagagcaactagaaacaaataag
attttaattgtcagaggtcgagtagaatatcgtgagggacggggtctacaattagttgct
aatcaattgcaggatgttaaaaaagttcaacagaaacgccgcaagcaacgatgggtttta
cgaatcttaccgtcattagacactgagatggtgcatcgagagttaaataatatttttaat
gaataccatggttcaattcctgtcttgttgttttatccagcaaacgataagaagatcctg
cttgaccaaaaacgatggttaaaaaattctcagaaagcaaaaaaggcgcttgtcgccgtt
cttggccaagaaaacgttgtcttacaacagcttaatagtaatcactga
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integrated database retrieval system
