Limosilactobacillus reuteri SD2112: HMPREF0538_22016
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Entry
HMPREF0538_22016 CDS
T01551
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lru
Limosilactobacillus reuteri SD2112
Pathway
lru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0538_22016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lru03019
]
HMPREF0538_22016
03400 DNA repair and recombination proteins [BR:
lru03400
]
HMPREF0538_22016
Enzymes [BR:
lru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0538_22016
Messenger RNA biogenesis [BR:
lru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMPREF0538_22016
DNA repair and recombination proteins [BR:
lru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HMPREF0538_22016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
SNF2-rel_dom
SNX17-31_F2_FERM
Motif
Other DBs
NCBI-ProteinID:
AEI58222
UniProt:
F8DPG5
LinkDB
All DBs
Position
2055578..2057017
Genome browser
AA seq
479 aa
AA seq
DB search
MKNKQEILDVLQNHFGFEDFRPGQEETINALLEGKDTLSILPTGAGKSLLYQLPAYLLSG
TILIVSPLISLMQDQVDRLHRQGEKRVIMLSGQLIGKERASVLHNLKSFKFIFTSPEMLD
NQQVLTALKKNKIALMVIDEAHCISQWGPDFRPEYLLLKEVRQQLGSPTTLLLTATATPR
IRQDILKKMGMTTAYQVIKSVDRPNIFLAVKSIATQKEKDGELLKLVQKFTGPGIIYFAS
RKLASQMAEWLENQTDLNVAAYHAGVAPIERFRIQNQFMNNELQVICATSAFGMGIDKND
IRYVIHYHLPSNLENYLQEIGRAGRDGKQSLAVLLYANGDEMIQRQLTSVDLPPVTILEQ
IKNGKLSASVLGEQASLFAFYLEHSFTPQQIITMFERRKIQTEKELQEMVAYIKEDGCKR
EYLLTYFGEQFAGSNEFCCDYELSDWATKLILPVSQPLSENNKVGWEDRLKGLLNITEN
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaataagcaagaaattctagatgttttacaaaatcattttggctttgaggatttt
cgtccaggccaagaagagacaattaacgccttactggaagggaaagacactttatcgatt
cttcccactggtgccgggaaatcccttttatatcaattgccagcttatttattgtcagga
acgatcctcattgtttcaccgttgatttcactaatgcaggatcaggttgaccgtcttcat
cggcagggagaaaaacgagtcattatgttaagcggccagcttatcggaaaagagcgagca
agtgtcctccacaatttgaaatcatttaaatttatatttacttctccggaaatgcttgat
aaccagcaagttttaaccgcgcttaagaaaaataagattgcgttaatggttattgatgag
gcccattgtatctcacagtggggccctgattttcgtcctgaatatttattactaaaggaa
gtgcggcagcaattaggatcgccgacaacattgctgttgacggcaactgctactcctcgt
attcgacaggatattttgaaaaaaatggggatgacgactgcctaccaggtaattaaatct
gttgaccgtcctaacatttttttagctgttaagtccatcgctactcaaaaggaaaaggat
ggtgaacttctgaaactagttcaaaaattcactggtcccggaattatttactttgcaagt
cgtaagctggcttctcagatggcagaatggcttgaaaaccaaactgatttaaatgtggca
gcttatcatgctggcgttgctccaattgaacgatttcgaattcaaaatcaatttatgaat
aatgaattacaggtaatttgtgcaacgagtgcgtttgggatgggaattgacaaaaatgat
attcgttacgttattcattatcatttgccaagtaatttagagaattatttacaggaaatc
ggtcgagctgggcgtgatggtaagcagagtttggcagttcttctatatgcaaatggcgat
gaaatgattcaacgacaattaacaagcgttgatcttccgccagttacaattttagagcag
attaagaatggcaagttgtcagcaagtgttttgggggagcaagcgtctttatttgcgttt
tatcttgaacattcttttacgccgcagcaaataattacgatgtttgagcggcgcaaaatt
caaacagaaaaagaattgcaagaaatggttgcttatatcaaagaggacggttgtaaaaga
gaatatcttttaacatattttggtgagcaatttgccggttcgaatgaattttgttgtgat
tatgagctttcagattgggcaactaaactgattttgccggtcagtcagccactttctgaa
aacaataaagtaggatgggaagaccgcttaaagggcctgttaaatattactgaaaattaa
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