KEGG   Lynx rufus (bobcat): 124501708
Entry
124501708         CDS       T08475                                 
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
  KO
K18412  trinucleotide repeat-containing gene 6 protein
Organism
lruf  Lynx rufus (bobcat)
Brite
KEGG Orthology (KO) [BR:lruf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lruf03019]
    124501708
   03036 Chromosome and associated proteins [BR:lruf03036]
    124501708
Messenger RNA biogenesis [BR:lruf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     124501708
Chromosome and associated proteins [BR:lruf03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    124501708
SSDB
Motif
Pfam: TNRC6-PABC_bdg Ago_hook M_domain RRM_occluded RRM_1
Other DBs
NCBI-GeneID: 124501708
NCBI-ProteinID: XP_046922047
LinkDB
Position
Unknown
AA seq 1835 aa
MGLIVPFVEVALSRSLIFQVNKPSGMVEQEDFVMEGHGKTPPPGEESKQYIHGTTEKEQE
REEQLMEDKKRKKEDKKKKEATQKVTEQKTKVPEVTKPSLSQPTAASPIGSSPSPPVNGG
NNAKRVAVPNGQPPSAARYMPREVPPRFRCQQDHKVLLKRGQPPPPSCMLLGGGAGPPPP
TAPGANSNNAQVTGTLLQSDGGTAPESTLGGAAASNYANSTWGPGASSNNGASPNPIHIW
DKVIVDGSDMEEWPCIASKDTESSSENTTDNNSASNPGSEKSTLPGSTTSNKGKGSQCQS
ASSGNECNLGVWKSDPKTKSVQSSNSTTESNNGLGNWRNVSGQDRIGPGSGFSNFNPNSN
PSAWPALVQEGNPRKGALETDTSNSSAQVSTVGQASREQQSKMENAGVNFVVSGREQAQI
HNTDGPKNGNTNSLNLSSPNPMENKGMPFGMGLANASRSTDAPSQSTGDRKTGSVGSWGA
ARGPSGTDTASGQSNSGNNGNNGKDREDSWKGASVQKSTGSKNDSWDNNNRSTGGSWNFG
PQDSNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIGEWSGPNQPNSSTGAWDNQKGHPLP
ENQGNAQAPCWGRSSSSTGSEVGGQSTGSNHKAGSSDSHNSGRRSYRPTHPDCQAVLQTL
LSRTDLDPRVLSNTGWGQTQIKQDTVWDIEEVPRPEGKSDKGTEGWESAATQTKNSGGWG
DAPSQSNQMKSGWGELSASTEWKDPKNTGGWNDYKNNNSSNWGGGRPDEKPSSSWNENSS
KDQGWGGGRQPNQGWTSGKNGWGEEVDQAKNSSWESPASKPVSGWGEGGQNEIGTWGNSG
NTSLASKGGWEDCKRSPAWTETGRQPNSWNKQHQQQQQPQQPPPPQPEASGSWGGPPPAP
PGNGRPSNSNWSSGPQPVTPKDEEPSGWEEPSPQSISRKMDIDDGTSAWGDPNSYNYKNV
NLWDKNSQGGPAPREPNLPTPMTSKSASVWSKSTPPAPDNGTSAWGEPNESSPGWGEMDD
TGASTTGWGNAPSNAPNAMKPNSKSMQDGWGESDGPVTGTRHPSWEEEDDGGVWNTAGSQ
GSASSHNSASWGQGGKKQMKCSLKGGNNDSWMNPLAKQFSNMGLLSQTEDNPSSKMDLSV
GSLPDKKFDVDKRAMNLGDFNDIMRKDRSGFRPPNSKDMGTTDSGPYFEKGGNHGLFGNS
TAQSRGMHTPVQPLNSSPNLRAQVPPQFISPQVSASMLKQFPNSGLNPGLFNVGPQLSPQ
QIAMLSQLPQIPQFQLACQLLLQQQQQQQLLQNQRKLSQAVRQQQEQQLARMVSALQQQQ
QQQQQQQQQQRQPGMKHSPSHPVGPKPHLDNMVPNALNVGLPDLQTKGPIPGYGSGFSSG
GMDYGMVGGKEAGTESRFKQWTSMMEGLPSVATQEANMHKNGAIVAPGKTRGGSPYNQFD
IIPSDTLGGHTGPAGDSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDPESDP
YVTPGSVLGGTATSPIVDTDHQLLRDNTTGSNSSLNTSLPSPGAWPYSASDNSFTNVHST
SAKFPDYKSTWSPDPIGHNPTHLSNKMWKNHISSRNTTPLPRPPPGLTNPKPSSPWSSTA
PRSVRGWGTQDSRLASASTWSDGGSVRPSYWLVLHNLTPQIDGSTLRTICMQHGPLLTFH
LNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFATDDEVSRFLAQAQPPTPAAT
PSAPAAGWQSLETGQTQSDPVGPALNLFGGSTGLGQWSSSAGGSSGADLAGASLWGPPNY
SSSLWGVPTVEDPHRMGSPAPLLPGDLLGGGSDSI
NT seq 5508 nt   +upstreamnt  +downstreamnt
atgggactaatagtcccctttgtggaggtagctctatctcggtcactgatcttccaggtc
aataagccatctggaatggtggaacaggaggattttgtaatggaagggcatggcaagact
ccacctcctggtgaagaaagcaaacagtacatacatggcactacagagaaggagcaagaa
agggaagaacagttaatggaagacaagaaaaggaagaaagaggataaaaagaaaaaagaa
gccactcagaaggtcacggaacaaaaaaccaaagtgcccgaagtgacgaaaccaagttta
agccaaccaacggccgccagcccaattggcagctctccatcgccaccagtcaatggtggc
aacaatgccaaaagggtggcagtgccgaacggacaaccgccaagcgccgcccgctacatg
cctcgggaggtgccgccgcgattccgttgccagcaggaccacaaagtgttactaaaacgt
gggcagccccctccaccatcctgcatgctcctcgggggcggggcagggcctcctcccccc
acggcacccggagcaaactccaacaacgcacaagtgacaggaacgctgctgcagagtgac
ggtgggactgcaccagagtcaacccttggaggtgctgctgcttcaaattatgcaaattcc
acttggggcccgggagcctcctccaacaacggcgcctcccccaacccaattcacatctgg
gacaaggtgattgtagacgggtctgacatggaagagtggccttgtatcgccagcaaagac
actgagtcttcttccgaaaacaccaccgataacaacagtgcctcgaaccctggctctgag
aagagcactctgccaggaagcaccactagtaacaaaggaaaagggagccagtgccagtct
gcaagttctgggaacgaatgtaatcttggggtctggaaatctgaccctaagactaaatct
gttcaatcttccaactctactacagagagcaacaatggactaggaaattggaggaatgtg
agtggtcaggatagaattggacctggctctggcttcagcaactttaacccaaatagcaac
ccatctgcctggccagcgctggtccaagaaggaaatcctaggaaaggggcattggaaacg
gatactagtaattccagtgcacaggttagcacagtaggtcaggcatccagggaacagcag
tcaaagatggaaaatgcgggtgttaattttgttgtctctggcagagaacaggctcaaatt
cataacactgatggaccaaaaaatggaaacactaactccttgaacttaagttcaccaaac
cccatggagaataagggaatgccctttggaatgggcttggcgaacgcctccaggagcact
gatgccccttcacaaagcactggagatcgaaagactgggagtgttggatcttggggtgca
gctagggggccttctggaactgacacagcctctggacaaagcaattctggaaacaatggg
aacaatggaaaggatagagaggactcctggaaaggagcctctgttcagaaatcaactggg
tcaaaaaatgactcttgggacaacaataacaggtctacgggtgggtcctggaactttggc
cctcaggactctaatgacaacaaatggggtgaagggaacaaaatgacatctggggtctct
cagggagaatggaaacagccgactgggtctgatgagttgaaaattggagaatggagtggt
ccaaaccaaccaaattctagcactggagcatgggacaatcaaaagggccaccccctccct
gaaaaccaaggcaatgcccaggctccctgttggggaagatcttccagctccacaggaagt
gaagttggaggtcaaagcactggaagcaaccacaaagcaggaagtagtgacagtcataat
tctggccgtcggtcataccggcccacacatcctgattgtcaggctgtcttacagactctt
ttgagccgaactgatttggaccccagggtgctctcaaacactggctggggccaaactcaa
attaagcaggacacggtgtgggatatcgaagaggtgccaaggcctgaggggaaatctgac
aaaggaactgaggggtgggagagcgctgccacacagaccaagaactcagggggctgggga
gatgcacccagccaaagcaatcaaatgaagtctggatggggggagctctcagcctctaca
gagtggaaagaccccaagaacacaggaggctggaatgactacaagaacaacaactcttcc
aactggggaggcggccgaccagatgaaaagccatcttcctcttggaatgagaactccagc
aaggatcaggggtggggagggggacgccagcccaatcaaggatggacttctgggaagaat
ggttggggagaggaagtcgaccaggcgaaaaacagcagttgggaaagtcctgcaagtaaa
cccgtgtctgggtggggcgaaggagggcagaacgaaatcggaacttgggggaacagtggg
aatacaagcctagcttccaaaggcgggtgggaagattgcaaaaggtctccagcatggacc
gagacaggcagacagcccaattcctggaataaacagcaccaacagcagcagcagccacag
cagccaccgccaccacaaccagaggcttctggttcatggggaggcccacccccagcacct
ccaggcaacggacgaccttccaattccaactggagcagcgggccacagccagtaacccct
aaggatgaggaacccagtggttgggaagagccatccccacagtcaattagtcggaaaatg
gacatcgatgatggcacttccgcatggggagaccctaacagttataactacaagaatgtg
aatctgtgggataagaattcccaagggggcccagcacctcgagaaccaaacctgcccacc
ccgatgaccagtaaatcagcatcagtctggagcaaaagcacaccacctgctccagataat
ggtacttcagcttggggtgagccaaatgaaagcagtcctgggtggggcgaaatggacgac
actggagcatcgaccacgggctgggggaacgcaccctccaacgctccaaatgccatgaaa
cctaattccaaatctatgcaagatggctggggggagagtgacggtccagtgacgggaact
cgccatcccagctgggaagaggaggacgatggaggagtctggaacaccgccggctctcag
ggaagtgcttcctcccacaactcagcaagctggggacaaggaggaaagaagcagatgaag
tgttcactgaaaggaggaaacaatgattcatggatgaatcctcttgccaaacagttttca
aatatgggattgctgagtcaaactgaagataatccaagcagcaaaatggatttgtctgta
gggagccttccagataaaaaatttgacgtggacaagagagcgatgaatctcggggatttt
aatgatatcatgaggaaggatcgatctgggttccgtccacctaattccaaagacatggga
accacagatagtgggccttattttgagaagggtggcaatcatggtttgtttggaaatagc
acagcacaatcgagaggtatgcacacgccagtgcagccgctaaattcttctcctaatctc
cgggcgcaagtgcctccccagtttatttccccccaggtttctgcctcaatgctcaagcag
tttcccaacagtggcctgaatccaggtcttttcaatgtggggccccagttatctcctcaa
caaattgccatgctgagccagcttccacaaattccccagtttcagttggcatgtcagctt
ctcctgcagcagcagcagcaacagcagttgctacagaaccagaggaagctttctcaagct
gtgcgccagcagcaagagcagcagctggctcgaatggtgagcgctctccagcagcaacag
cagcagcagcagcagcagcagcagcagcagaggcagcccggcatgaagcactcgccctct
catcccgttgggcccaagccgcatctggacaacatggtacccaacgctctgaatgtgggg
ctcccagaccttcaaaccaaagggccaatacctggatatggttctggcttcagctctggc
ggcatggactatggcatggttggtgggaaggaggctggaacagagtctcgctttaaacag
tggacctccatgatggagggactgccctctgtagccacacaggaagccaatatgcacaaa
aatggcgctatagtggcccctggtaagactcgaggagggtcaccatacaaccagtttgat
atcatcccgagtgacacactgggtggccatacgggtcctgctggtgatagctggttacct
gccaaatctccaccaacaaataaaatcggaagtaaatccagcaatgccagttggcctcca
gaattccaaccaggagtgccatggaaaggtatccaaaacattgaccctgaatctgacccc
tatgtcaccccaggaagtgtgctggggggtacagccacatctcccattgtagatactgac
caccaacttctgcgggataacaccacagggtctaattcttccctcaacacctcgctgcct
tcacctggtgcctggccctacagtgcctctgacaactcctttaccaacgttcatagcact
tcagcaaagttccctgattacaaatcaacatggtccccagatcccataggacacaacccc
actcatctctccaacaagatgtggaaaaaccatatttcctcaaggaacactacaccgctg
ccccgcccacctcctggtctgaccaaccccaaaccatcatctccctggagcagcacagca
ccccgatcggtcaggggttgggggacacaggactcacggcttgcctcagcctctacttgg
agtgatggtggttcagttcgtcccagttactggctggttcttcacaatctcactccacag
attgatgggtcaacgttgagaaccatctgcatgcagcatggcccactgctgacattccat
ctgaacctaacccagggcactgccctgatccgatacagcaccaaacaggaggcagccaag
gcccagactgcactgcacatgtgtgtgttgggaaacactaccatcctggctgagtttgcc
accgatgatgaagtcagccgctttctggcacaagctcagccccctacacctgcagcaacc
ccaagtgcacccgccgcaggttggcagtcgctggagaccggccagacccagtcagatccc
gtcggacctgctttgaatcttttcggtgggtccacagggctcgggcagtggagcagcagt
gctggcggcagcagcggggccgatcttgctggcgcttcgttgtgggggcccccaaactat
tcttctagcttgtggggagtcccaactgtggaagatccccataggatgggcagccctgct
cccttactacctggtgaccttctgggaggagggtcggattcaatctga

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