Lynx rufus (bobcat): 124503699
Help
Entry
124503699 CDS
T08475
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124503699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lruf03021
]
124503699
Enzymes [BR:
lruf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124503699
Transcription machinery [BR:
lruf03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
124503699
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
DUF2201_N
Motif
Other DBs
NCBI-GeneID:
124503699
NCBI-ProteinID:
XP_046924874
LinkDB
All DBs
Position
Unknown
AA seq
1718 aa
AA seq
DB search
MLGSKTMPWRRLQGISFGMYSADELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADS
KEVCSTCVQDFNSCPGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL
VCQLRVLEVGALQAVYELERILNRFLEENADPTAFEIQEELERYTTHIVQNNLLGSHGAH
VKNVCESRSKLIASFWKAHMSAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHRKADQKDT
EPLGIEDAQMGKRGYLTPTSAREHLIALWKNEGFFLNYLFLGLEDVGMESRFNPSMFFLD
FLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDMVLIRKLLALMAQEQELPCEVAAPAK
DEEKDSSITLDRSFLSTLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQI
LEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL
RQAVINGPSVHPGASMVINEDGSRTALSAVDLTQREAVAKQLLTPATGAPKPQGTKIVCR
HVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTTRGCFFTREQYMELLYRG
LTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLSLSGKAKISGKAWVQES
PQPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTC
LARLFTAYLQLYRGFTLGVEDILVKPKADVKRHRVIEESTHCGPRAVRAALNLPEAASCD
EVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYNNEINKACMPFGLHRQFPENNLQMMVQS
GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIK
PPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYG
EDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQKALRHFRAIKKWQSRHP
NTMLRNGAFLNYSQKIQAAVKALNLEGGNQNGRSPGTHQILRMWGELDEQSRRKYQKKAA
PCPDPSLSVWRPDIYFASVSETFEKKVDDYSLEWASQAEKSYEKSELSLDRLRTLLQLKW
QRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIK
TPMMSVPVFNTKKALKRVKSLKKQLTRVCLGEVLEKIDVQESFCIGEKRDKFQVYQLRFQ
FLPRAHYQQEKCLRPEDILHFMETRFFKILMESIRKKNNKASAFRSVNTRRATQRDLDNT
GDSERNRGEQEGDEEEEGHIVDAEAEEGDADASDTKRKKKQEEEVDYESEEDEVGEENDN
EDMQEEGHGPGEGAEKAQEQDEEVGSGPEEDSAPAAPLTQPRKSTRVREPQGAEAVERRA
QAVRESHPFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAQGTVVYATKGITRC
LLNETTNKKNEKELVLNTEGINLPELFKYAEVLDLSRLYSNDIHAMANTYGIEAALRVIE
KEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLK
QATMMGSHDELRSPSACIVVGKVVRGGTGLFELKQPLR
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atgttgggctcgaagaccatgccctggcggaggctgcagggcatttccttcgggatgtat
tcggcagacgagctcaagaaattaagcgttaagtccattacgaaccctcgttacctggac
agcctgggaaacccatcagtgaacggcctgtacgatttagctttgggccctgcggattcc
aaagaggtgtgctccacctgtgtgcaggacttcaacagctgccctggccacctgggccac
attgagcttccgcttacagtgtataaccctctcctctttgataaactctacctgctgctc
cggggctcctgtttaaactgtcacatgctgacctgcccccgggctgtgattcacctctta
gtctgccagctgcgagttctggaagtcggggccctacaagcagtctacgagcttgagaga
attctgaacaggtttctagaagaaaacgctgatcctactgccttcgaaattcaggaagag
ttagaacgatatacaacccatattgtacagaacaatctgttgggatcccatggtgcacat
gtgaaaaatgtttgtgagagcaggagcaaactcattgcttccttctggaaggcacacatg
agtgctaagcgatgtccccactgcaagactggacggtcagttgtccgaaaggagcacaac
agcaaactgaccatcacatatccagccatggtgcacaggaaagctgaccagaaggacaca
gaacccctgggaattgaggatgctcagatgggaaaacgagggtacctgacaccgaccagt
gcccgagaacatcttattgccctttggaagaatgaaggattctttctgaattaccttttt
ttgggactggaagatgttggcatggagtccagattcaatcccagtatgttctttttggat
ttcttggtggtgcccccctcaaggtatcgccctgtcaatcggctaggggaccagatgttt
actaatggccagacggtgaacttgcaggctgtcatgaaggacatggtcctgatccgaaaa
cttctggcgttgatggcccaagaacaggagctgccatgtgaggtggcagcacctgccaag
gatgaggaaaaagactcttcgattaccctggaccgatcctttttgagtacgcttcctggc
cagtccctcacagacaaactttacaacatttggattcgtcttcagagccacgtcaatatc
gtgtttgatagtgaaatggataaattaatgatggaaaagtatcctggcattagacagatc
ctggagaagaaggatggcttattccgaaagcacatgatgggaaagcgagtggactatgcg
gcccgctctgtcatctgcccagacatgtacattaacaccaacgaaattggaattcctatg
gtgtttgccacaaaactgacctaccctcagccagtcaccccctggaatgttcaggaactg
aggcaagcagtcatcaatggccccagtgtgcacccgggagcctccatggtcatcaacgag
gatggcagtcgtacggccctgagtgctgtggacctgacacagcgggaagccgtggccaaa
cagctcctgacaccagccacgggggcacctaagccccaggggacaaaaattgtgtgccgg
catgtgaagaatggggacatcctcctgctgaaccgacagcccaccctgcacagaccctcc
atccaggcacaccacgcccgcatcctgcccgaagagaaagtcctgcggctccattatgcc
aactgcaaggcgtataatgccgactttgatggagacgagatgaatgcccacttcccccag
agtgaactgggccgggctgaggcctacgtcctggcctgtacagatcagcagtaccttgtt
cccaaggatggccagcccttggcggggttgattcaagatcacatggtttcaggtgcaaac
atgaccactcgaggttgctttttcactcgggagcaatatatggagctgctgtaccgagga
ctcacagacaaagtggggcgtgtgaagctctttcctcctgccatcctgaagccctttcca
ctgtggacgggaaagcaggttgtgtcaacgctgctcataaacataatcccagaggaccac
atcccactgagcttatcgggaaaggcgaagatcagcggcaaagcctgggtgcaggagtct
cctcaacctgttcccggctttaaccctgactcaatgtgcgagtcccaggtgatcatcaga
gaaggggagctgctctgtggggtgctggacaaggcacactatgggagctccgcctatggc
ctggtccactgctgctacgagatctatggtggggagaccagcggcaaggttctcacctgc
ctggcccgcctcttcaccgcctacctgcagctctacagaggtttcaccttgggcgtggaa
gacattctggttaagccgaaggcggatgttaagagacacagagtcattgaagagtccacc
cactgcgggccacgggctgtcagggctgcattaaacctgccagaagctgcgtcatgtgac
gaggtccgagggaaatggcaggatgcccatctgggcaaagaccagagggattttaacatg
attgatctgaagttcaaggaggaagtgaaccattacaacaatgagattaacaaggcatgc
atgccatttggcctgcacagacagttcccagagaacaacttgcagatgatggtgcaatct
ggagccaaaggttcaactgtaaacaccatgcagatctcatgcctgctgggccagattgaa
ttggaaggtcggagaccccccctgatggcgtctggcaagtcactgccctgctttgagcct
tatgaattcacccccagggctggcggcttcgtcactggcagattcctaactggtatcaag
cctcctgagttcttctttcactgcatggcagggcgagagggtctggtggacaccgccgtg
aaaaccagccgctccggctatctccaaaggtgcatcatcaagcacttggaggggctggtc
gtccagtatgatctgacagtccgcgacagcgacggcagcgtggtccagttcctgtatggg
gaggacggcctggacatccccaagacacagttcctgcagcccaagcagttccccttcctc
gccagcaactatgaggtgataatgaaatcgaagcatctccatgaagttttatccagagca
gatccccaaaaagctctccgccacttcagagccatcaaaaaatggcaaagcaggcatccc
aacaccatgctgagaaatggtgccttcttgaattattcacagaagattcaggcagccgtg
aaagccttgaaccttgagggtgggaaccagaatggccgcagccctgggactcaccagata
ttgagaatgtggggtgagttagatgagcagagtcgaaggaaataccagaagaaggcagct
ccttgtccagaccccagtctgtccgtctggcgcccagacatctactttgcatcagtgtcg
gaaacatttgaaaaaaaggtggatgactatagtctcgagtgggcatctcaagcagagaag
agttatgagaaatcagagctttctcttgacaggctgaggaccctgctgcagctcaagtgg
cagcgctcgctatgtgatccgggtgaggccgtgggcctactggctgcccagagcattggg
gagccctccacacagatgaccctgaacactttccactttgctggcagaggcgagatgaat
gtcactctgggcattccgaggttgagggagattctcatggtggccagtgccaacatcaag
acgcccatgatgagcgtgcccgtgttcaacaccaagaaagcactgaagagagtaaaaagc
ctgaagaagcagctcaccagagtgtgcttaggggaggtgttggagaaaattgatgtccag
gaatccttctgtatcggagaaaaacgggacaagtttcaggtgtatcagttgcggtttcag
ttcctgccacgtgcacattaccagcaggagaagtgcctgagacctgaggacatcctgcac
ttcatggaaacgagattctttaaaattctgatggaatccatcagaaagaagaacaataaa
gcctcagctttcagaagcgtaaacactcggagagctacccagcgggatctagacaacact
ggggactcagagaggaaccggggagagcaggagggtgatgaggaagaggaggggcacatt
gtggatgctgaagccgaggagggagacgctgacgcctctgataccaagcgcaagaagaaa
caagaggaggaggtcgattatgagagcgaagaggacgaggttggggaggagaacgacaac
gaggatatgcaggaggaagggcatggccccggggaaggtgccgagaaggcccaggagcag
gatgaagaggtgggctcaggccccgaggaggactcggcccctgccgcccccctcacacag
ccccggaaatccacccgcgtcagggagccccagggagccgaggccgtggagcgccgtgcg
caggccgtgcgcgagtcccacccgttcatagaggactaccagtacgacaccgaggagagc
ttgtggtgccaggtgacagtgaagctccctctgatgaagatcaactttgacatgagctcc
ctggtagtgtccttggcccagggcaccgtcgtctacgcgacaaagggcatcacgaggtgc
ctcctaaatgaaaccaccaataagaagaacgagaaggagcttgtcttaaacacagaagga
atcaacttgccagagctgttcaagtatgccgaggttctggacttaagccgcctctattcc
aacgacatccacgccatggccaacacgtatggcatcgaggccgcgctgcgggtgattgag
aaggaaatcaaggacgtgtttgctgtgtatggcattgaggttgatccccgccatctctcc
ctggttgccgactatatgtgcttcgagggcgtgtacaagccattgaatcgctttgggatc
cggtcaaactcctcccctctgcagcaaatgacatttgaaaccagcttccagtttctgaag
caggccaccatgatgggatcgcatgatgagctgaggtccccttcagcctgcatcgtggtt
gggaaagttgtcagaggcgggacaggcctattcgagctcaagcagcccctgagatag
DBGET
integrated database retrieval system
