Lynx rufus (bobcat): 124504829
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Entry
124504829 CDS
T08475
Name
(RefSeq) DNA-binding protein SMUBP-2-like isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
lruf
Lynx rufus (bobcat)
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lruf03009
]
124504829
03012 Translation factors [BR:
lruf03012
]
124504829
Enzymes [BR:
lruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124504829
5.6.2.5 RNA 5'-3' helicase
124504829
Ribosome biogenesis [BR:
lruf03009
]
Eukaryotic type
Other ribosome biogenesis factors
124504829
Translation factors [BR:
lruf03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124504829
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
DEAD
ResIII
Viral_helicase1
nSTAND3
AAA_16
SLFN-g3_helicase
AAA_22
UvrD-helicase
IstB_IS21
Flavi_DEAD
Helicase_RecD
AAA_25
AAA
Ada3
PhoH
ABC_tran
DnaB_C
Zot
NPHP3_N
UvrD_C_2
AAA_18
NTPase_1
Herpes_ori_bp
AAA_33
Motif
Other DBs
NCBI-GeneID:
124504829
NCBI-ProteinID:
XP_046926361
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MASAAVESFVSKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQRTGLY
GRLLVTFEPRRCASATALPSNSFTSGDIVGLYDEGGQLATGILTRIMQRSVTVAFDESHD
FQLSLDRERAYRLLKLANDVTYKRLKKALISLKKYHSGPASSLIEVVFGGSPPSPASETQ
PPPFCNTSLDASQKEAVSFALSQKELAIIHGPPGTGKTTTVVEIILQAVRRGLKVLCCAP
SNVAVDNLAERLARCQQKVLRLGHPARLLECIQQHSLDAVLARSDSAQIVADIRKDIDQA
FLKNRQTQDKREKSSFWNEIKLLRKELKEREEAAMLESLRSAAVVLATNTGASPDGPLKL
LPDGHFDVVVIDECAQALEASCWIPLLKAGKCILAGDHKQLPPTIVSPKAAAAGLARSLM
ERLAAEQGASVVRTLTVQYRMHRAIMQWASEALYHGRLTAHPSVAGHLLRDLPGVAATEE
TGIPLLLVDTAGCGLFELEEEDDQSKGNPGEVRLVSLHVQALVEAGVRASDIAVITPYNL
QVDLLRQSLAHRHPELEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAVTR
ARRHVAVVCDSRTVNNHAFLKTLVDHFTEHGEVRTAFEYLDDIVPENYSHESSQGHGQAG
ARPRGPAAAAGKPPGSRMREGVREARAAAGLQRKTPGGKPSGPEVGSQPSLNGGGLCPEA
ADGRDRADRFRAEIAEFVASENTRLEFPASLNSHDRMWIHQIAEEHGLRHDSTGEGKKRF
ITVSKRAPPAPPPPAGGPTAPGPTEAEPPPGEQSGRDPPDLKALHLERLQREKSRREPRA
EQGQQASRSGPRKLPEKKKKKEVKGHVAVDLPGEEDFDALVSAAVKADNTCGLAKCTASV
ATLGQLCLHCGRRFCLSHHLPEIHSCGERARAHARQRISREGVLYAGSGTKDRSLDPARR
AQLQRRLDKKLGELTSQRKGKRKEKEK
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggcggctgtggagagcttcgtgagcaagcagttggacctgctggagctcgag
agagacgcggaggtcgaggagcgcaggtcctggcaggaaaacatctctctgaaagagctc
cagagccgaggggtctgtttgctgaagctgcaggtgtccagccagcggaccgggctgtac
gggcggctgctggtcaccttcgagcccaggagatgtgcgtctgccacggcccttcccagc
aacagctttacttccggagatatagtgggtctgtatgacgaaggcggtcagctggccacg
gggatcctgacccggatcatgcagagatcggtcacagtagcctttgatgagtcccatgat
ttccagctgagcttagaccgagagcgtgcctacagactgttaaaactcgccaatgacgtc
acttataagcggctgaaaaaagctctcatttccctaaagaagtatcattcgggccccgcg
agctccctcatagaggtcgtcttcggtggatcaccccccagtcctgccagtgaaacacag
ccgccgccgttctgtaacacctccctggacgcctcccagaaggaagccgtctcctttgcg
ctgtcccagaaggaacttgccatcatccacgggcctcctggcactgggaagaccaccact
gtggtcgagatcatccttcaggctgtgagacggggcttaaaggtgctgtgctgtgccccc
tctaacgtcgccgtggataacctggcagagcggctggcgcggtgtcagcagaaggtcctg
cgcctcgggcaccccgcccggctgctggagtgcattcagcagcactccctcgacgccgtg
ttggcacgcagcgacagcgcccagatcgtcgcagacatcagaaaggacatcgaccaggcc
ttcttgaagaacaggcagacccaggacaagagagagaagagtagtttctggaacgaaatc
aagctgttacggaaagagctgaaggagagggaggaggccgccatgctggagagcctcagg
tcggcagccgtggtgctggcaacgaacacaggcgcttctcccgacggccctctgaagctg
ctgcccgacggccacttcgacgtggtggtcattgacgagtgcgcccaggccctcgaagcc
agctgctggatccccctgctgaaggccgggaagtgcatcctggccggagatcacaaacag
ctgccgcccaccatcgtgtcccccaaggccgcggcggcgggcctggcgcgcagcctgatg
gagcgcctggcggcggagcagggcgcgagcgtggtgcggacgctgacggtgcagtaccgc
atgcaccgggccatcatgcagtgggcctccgaggccctgtaccacgggcggctcacggcc
cacccttctgtggcgggccacctcctgcgggacctccccggggtggccgccacggaggag
acgggcatccccctgctgctcgtggacacggccggctgcgggctctttgaactcgaagag
gaggacgaccagtctaaggggaaccctggcgaggtgcgtctcgtcagcctgcacgtccag
gccttggtggaggctggcgtccgagcgagcgacattgccgtcatcacaccatacaacctc
caggtggacctgctcaggcagagcctcgctcacaggcaccccgagcttgaaattaagtcg
gtcgatggcttccaaggccgagagaaggaggctgtggtcctgtccttcgtcagatccaat
aggaaaggcgaagtgggtttcctcgccgaggaccggcggatcaacgtggccgtcacccgc
gctcggcgccacgtggcggtcgtgtgtgattcgcgcaccgttaacaaccacgcctttctg
aagaccctggtggatcacttcacggagcacggcgaggtgcgcacggcctttgagtatctc
gatgacatcgtccctgaaaactactcccacgagagttcccagggccacggccaagctggt
gcgaggccccggggccctgccgcggctgccgggaagcctcctggaagccggatgcgggag
ggggtccgggaggcccgggcggccgccgggctgcagcggaagacgcctggcgggaagccc
tcgggccctgaggtcggttctcagcccagcctcaacggaggcggcctctgccccgaggcc
gcggacggcagagaccgcgcggaccgcttcagggccgagatagcggagtttgtggcgagt
gagaacacgcggctggagtttcccgcgtccctgaactcacacgacaggatgtggatccac
cagatagcggaggagcacgggctgaggcacgacagcaccggcgaagggaagaagaggttc
ataaccgtgagcaagagggccccgcctgccccgccgcctccagcgggcggccccacggcc
cccggccccacggaggcggagccccctcccggggagcagagcggccgggaccccccggat
ctgaaggctctgcacctggaaaggctgcagagggagaagagccggcgggagccgcgggcc
gagcaggggcagcaggcctcgcgctcagggccgcgcaagttaccggagaagaaaaagaaa
aaagaagtaaaaggacacgtggccgtagacttgcccggtgaggaggacttcgacgccctg
gtctcggccgccgtgaaggccgataacacctgcggccttgctaagtgcacagccagcgtc
gcgaccctgggtcagctctgcctgcactgcggccgccgcttctgcctcagccaccacctg
ccggagatccacagctgtggggagagagctcgcgcccacgcccggcagaggatcagcagg
gaaggagtcctctacgccggcagtggcaccaaggacaggtccctggacccagccaggagg
gcccagctccagaggaggctggataagaagctgggtgagctgaccagccagaggaagggt
aaacggaaggaaaaggagaagtga
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