Lynx rufus (bobcat): 124504848
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Entry
124504848 CDS
T08475
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124504848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lruf03019
]
124504848
Messenger RNA biogenesis [BR:
lruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124504848
mRNA degradation factors
5'-3' decay
Decapping complex
124504848
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
124504848
NCBI-ProteinID:
XP_046926387
LinkDB
All DBs
Position
Unknown
AA seq
770 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PAAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLTQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
VIGSPPVRAVPIGTPPKQMAVPSFSQQILCPKPVHVRPPMPPRYPAPYSERASPNQLCSV
PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLPPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQVLPPAPGFRAFFSAAPPAPPPPQQHSPGPGPHLQNLRSQAPMFRPDTTHLHPQ
HRRLLHQRQQQNRNQHRSLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEVQGEGPKKERTKLITPQVAKLEHAYKPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPALADERKHKICCMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQLM
NLPQSAAAPAPSNPHLAAVLQNKFGLSLLLVILSRGEDLQSSEPATESTQNNQWTEVMFM
ATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttagaggattgtcctctggacgaagatgaagatgcctttcag
ggcttgggagaggaagatgaagagattgatcaattcaatgatgatacgtttgggtcaggt
gcagttgatgatgactggcaggaagcacatgagcgcctggctgaactggaagagaagctc
ccggcggcagttaatgaacaaacgggcaatggagaaagggatgagatggacttgctgggt
gaccatgaggagaatctggcagaaaggctcagtaagatggtgattgagaatgagctagaa
gatccagctatcatgagggcagtgcagaccaggccagtcctgcaaccccaaccagggagt
ctcaattccagcatctgggatggatctgaagttctgaggcgaatccgaggaccactgcta
actcaggaaatgcctacagtgtctgtattagaatatgccctgcctcagaggcccccacag
ggcccagaagatgatcgggacctttctgagcgtgctttgccgcggcggtccacgtcacct
gtcatcgggagccctcctgttagagccgtccccataggcaccccacctaagcagatggct
gtacccagcttcagccaacagatcctgtgtccgaagcctgtccatgtccggcccccgatg
ccaccgcgctatcctgctccctacagtgagagggcgtccccaaaccagctctgcagtgtc
ccgaactcttccctgctgggtcaccctttccctcctagtgttcctcctgtcctcagcccc
ctccagagagcacagcttctgggaggagcacagctgccgcctggacggatgtctcccagc
cagtttgcacgagttcctggatttgttggcagcccgcttgccgccatgaatcccaagttg
ctgcaagggcgagtggggcaggtgctgcccccagcgccgggcttccgtgccttctttagt
gctgcaccccccgccccaccgcctccccagcagcactcccccggcccagggcctcacctg
caaaacctaaggtctcaggccccgatgtttagaccagacacaactcacctccatccccag
caccgccggctcttgcatcagaggcagcagcagaacagaaatcagcatcggagtcttaac
ggtgcgggagatagaggaagtcaccggagcagccatcaggaccatctccgaaaggacccc
tacgccaacctcatgctgcagcgagagaaagactgggtctctaaaatccagatgatgcag
ctacagagcactgacccctacctggacgatttttattaccagaattactttgaaaaactg
gagaaactgtcagctgctgaagaagtgcaaggtgaaggccctaaaaaggagcgtaccaag
ctcattacccctcaggtggccaaactggagcacgcctataagccagtgcagtttgagggc
tctctgggaaagctcactgtctctagtgtgaataatccccgaaagatgatcgatgctgtt
gtgacatctcggagtgaggatgacgagacgaaagaaaaacaggttcgggacaagagacga
aaaaccctggtcataattgagaaaacctatagtttactccttgatgtggaggattatgaa
aggcggtatctcctaagtctagaagaagagcgacctgccctggcggatgaaagaaagcac
aaaatttgttgcatgtatgacaacttaagggggaaattgcctggacaagagaggccaagt
gatgaccactttgtacagatcatgtgtatccgaaaagggaagagaatggttgcccgtatt
cttcctttcctctccacagagcaagcagctgacattctcatgacaacagccaggaatctc
cctttccttatcaagaaggatgcccaagatgaggtgctgccatgcttactgagtcccttc
tccctcctgctctatcaccttccatcagtgactgtcaccagccttctgcaacagctaatg
aacctacctcagagcgcagctgcgccagcgccctctaaccctcacctcgctgctgtgctc
cagaacaagtttggcctgtcactgctcctcgtcatcctgagccgtggggaagacctacag
agttcagagcctgctacagaatccacacagaacaaccagtggacagaggtgatgttcatg
gcgacccgagaacttctgcggattccccaagcagccctggccaagccaatctcaataccg
acaaacctggtatccctcttttctcgctatgttgaccgacagaaactgaacttgctggaa
accaagctgcagctagttcaggggatacgataa
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