KEGG   Lynx rufus (bobcat): 124504922
Entry
124504922         CDS       T08475                                 
Name
(RefSeq) DNA damage-binding protein 2 isoform X1
  KO
K10140  DNA damage-binding protein 2
Organism
lruf  Lynx rufus (bobcat)
Pathway
lruf03420  Nucleotide excision repair
lruf04115  p53 signaling pathway
lruf04120  Ubiquitin mediated proteolysis
lruf05161  Hepatitis B
lruf05169  Epstein-Barr virus infection
lruf05200  Pathways in cancer
lruf05202  Transcriptional misregulation in cancer
lruf05210  Colorectal cancer
lruf05212  Pancreatic cancer
lruf05213  Endometrial cancer
lruf05214  Glioma
lruf05216  Thyroid cancer
lruf05217  Basal cell carcinoma
lruf05218  Melanoma
lruf05220  Chronic myeloid leukemia
lruf05222  Small cell lung cancer
lruf05223  Non-small cell lung cancer
lruf05224  Breast cancer
lruf05225  Hepatocellular carcinoma
lruf05226  Gastric cancer
Brite
KEGG Orthology (KO) [BR:lruf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    124504922
  09124 Replication and repair
   03420 Nucleotide excision repair
    124504922
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    124504922
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    124504922
   05202 Transcriptional misregulation in cancer
    124504922
  09162 Cancer: specific types
   05210 Colorectal cancer
    124504922
   05212 Pancreatic cancer
    124504922
   05225 Hepatocellular carcinoma
    124504922
   05226 Gastric cancer
    124504922
   05214 Glioma
    124504922
   05216 Thyroid cancer
    124504922
   05220 Chronic myeloid leukemia
    124504922
   05217 Basal cell carcinoma
    124504922
   05218 Melanoma
    124504922
   05213 Endometrial cancer
    124504922
   05224 Breast cancer
    124504922
   05222 Small cell lung cancer
    124504922
   05223 Non-small cell lung cancer
    124504922
  09172 Infectious disease: viral
   05161 Hepatitis B
    124504922
   05169 Epstein-Barr virus infection
    124504922
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lruf04121]
    124504922
   03400 DNA repair and recombination proteins [BR:lruf03400]
    124504922
Ubiquitin system [BR:lruf04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     124504922
DNA repair and recombination proteins [BR:lruf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      124504922
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR75_1st WDR55 Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 Beta-prop_IFT140_1st EIF3I Beta-prop_WDR19_1st Beta-prop_TEP1_2nd WD40_RFWD3 Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_Vps41 Beta-prop_WDR35_TULP_N WD_LRWD1 EF-hand_1
Other DBs
NCBI-GeneID: 124504922
NCBI-ProteinID: XP_046926561
LinkDB
Position
Unknown
AA seq 499 aa
MSFPTYWEEFCVYFTLGCFFGSVLRNPARVCFHIISYLASLQNYYWGSVWGKGLNPYSLY
FVLPETEQTMERPLRGNERDWLCRMEQQSFLSEISAGNPSVRESREENMCLFCLAGSSRR
FDSGCLWAGLASLQVPPSYTSIVRALHHHKLGKAAWPSLQQGLQQSFVHSLASYRIFQKA
APFDRRATSLAWHPTHPSTLAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSVTGLKFNPL
DTNQFFTSSMEGTTRLQDFKGNTLRVFTSSDTCNIWFCSLDVSARSRMVVTGDNVGHVIL
LNMDGRELWNLRMHKKKVTHVALNPCCDWLLATASVDQTVKIWDLRQVKGKSSCLHSLLH
SHPVNAACFSPDGAQLLTTDQKSELRVYSASQWDCPPSLIPHPHRHFQHLTPIKATWHPR
YNLIVVGRYPDPNFKSCTPHELRTIDVFDGSSGKMMYQLYDPESSGIISLNEFNPMGDTL
ASLMGYHILIWSQEAGMRK
NT seq 1500 nt   +upstreamnt  +downstreamnt
atgagttttccaacctactgggaagagttctgtgtatactttactcttgggtgtttcttt
ggttccgttctcagaaaccctgcaagggtttgttttcatattatttcatatttagcttca
cttcagaattactattgggggagtgtttggggcaaggggctgaatccctactcactatat
tttgtgctgcctgagactgagcagaccatggaaaggcctttaagaggtaatgagagagat
tggctatgtagaatggaacaacaaagctttctttctgagatttcagcaggaaacccttcc
gtgcgtgagagcagagaggaaaatatgtgtctgttctgcttggcaggttctagcagaaga
tttgactcaggctgcctttgggcggggttggctagccttcaggtcccgccatcatacacc
agcatcgtcagggcccttcaccaccataagctgggcaaagctgcctggccatcactacag
cagggtctccagcagtcctttgtgcactctctggcttcttaccggatattccaaaaggct
gccccttttgacaggagggctacatccttggcatggcacccaactcaccccagcaccctg
gctgtgggttccaaagggggagatatcatgctctggaactttggcataaaggacaaaccc
accttcattaaagggattggagctggagggagcgtcactgggctgaagtttaaccctctt
gataccaaccagtttttcacctcctcaatggagggaacaactaggctgcaagactttaaa
ggcaacacgctccgagtgtttaccagctcagacacctgcaacatctggttttgcagcctg
gatgtgtctgccagaagccgaatggtggtcacaggcgacaatgtgggacatgtgatcctg
ctgaacatggacggcagggagctttggaatctgagaatgcacaaaaagaaagtgacccat
gtggctctgaacccatgctgtgattggctcctggccacagcctctgtggaccaaacagtg
aaaatctgggacctgcgccaggttaaagggaaatccagctgcctccactcgctgctgcat
agccatcctgtcaacgcagcttgtttcagtcctgacggagcccagctcctgaccactgac
cagaagagtgagctccgggtttactcggcctcccagtgggactgccccccaagcctgatc
ccacaccctcaccgccacttccagcacctgacgcccatcaaggcaacctggcatcctcgg
tacaacctcattgttgtgggccgatacccagatcctaatttcaaaagttgtaccccccat
gaattaaggaccattgatgtgtttgatggaagctcagggaagatgatgtatcagctctat
gacccagaatcttctggtatcatttcgctcaatgagttcaatcccatgggggacacgctg
gcctctctgatgggttatcacattctcatttggagccaggaagctgggatgcggaaatga

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