Lynx rufus (bobcat): 124505894
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Entry
124505894 CDS
T08475
Name
(RefSeq) collagen alpha-1(XIII) chain-like
KO
K16617
collagen type XIII alpha
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
124505894
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lruf00536
]
124505894
Glycosaminoglycan binding proteins [BR:
lruf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124505894
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
124505894
NCBI-ProteinID:
XP_046927916
LinkDB
All DBs
Position
Unknown
AA seq
771 aa
AA seq
DB search
MVAERPRKAAAAGARGPGELSAPATVALAVAPAERCARLPSPGSCGLLALALCSLALSLL
AHFRTAELQARVLRLESERGEQQMETAILGRVNQLLDEKWKLHSRRRREAPPKTSAGCHC
PPGPPGPAGRPGLPGDKGAIGIPGRVGVKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGF
PGFPGPIGLDGKPGHPGPKGEMGLMGPRGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLA
PPPVIKRRTFQGEQGQAGIQGPPGPPGPSGPSGPLGPPGLPGPMGPPGLPGPPGPKGDPG
IQGYHGRKGERGMPGMPGKHGAKGAPGITVAGMKGEPGTPGAKGEKGAAGSPGLLGLLGQ
KGEKGDAGNSFGGGRGEPGPPGLPGPPGPKGEAGVDGQAGPPGRQGDKGEPGAAGEQGLA
GPKGSKGEPGKEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLP
GPPGHDGEKGPRGKPGDMGPPGPQGPPGKAGPTGMKGEDGHVGSPGEKGEKGETGQTGPP
GLDGPTGEKGEPGGQGRPGTTGLPGPIGLPGFTGEKGEPGEKGDPGVEVPGPPGPEGPPG
PPGLQGVPGPKGEAGLDGAKGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPVGVPG
PAGPKGERGSKGDLGMTGPSGAAGLPGLHGPPGDKGNRGHRGFKGEKGEPGLPGLDGLDA
PCPLVWHHPPSPAWPTQASPRVWFLPACLSSRPPHASCPIHSVSTSCPFSL
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggtagccgagcgcccccgcaaagcggcagccgccggtgcccgcggccccggggagcta
agcgcgcccgcgacggtggcgctggcggtggcgccggcggagcgctgcgcgcggctgccg
agcccggggtcgtgcgggctgctggcgctggccctgtgttcgctggcgctcagcctgctc
gcccactttcggaccgcggagctgcaggcccgggtgctgcgcctggaatcggagcgtggg
gagcagcaaatggagacggctattttgggacgagtcaaccaactgctggatgagaaatgg
aagctccactctcggaggcgccgggaggcccccccgaagacgtctgcggggtgtcactgc
ccaccaggacctcctggtcccgctggaagacccggcctcccaggggacaaaggtgccatt
gggattcctggacgtgtgggagtaaagggccaaccaggcgagaagggggccccaggagat
gccggcatgtccatcatcggtccccgcggcccccctggtcagccgggcactcgaggtttt
cctggatttccgggtcccatcgggctagatggaaaaccgggccaccccggacccaaagga
gagatgggcctgatgggtccccgaggacagccgggacctcaaggacaaaaaggagaaaag
ggtcagtgtggagagtacccacatcggctgctgcctctcctcaattcagtgcgactggct
ccacccccagtcataaaaaggcggaccttccagggtgaacagggccaggccggtatccaa
ggaccaccggggccaccaggcccctctggaccgagcggacctctggggcccccgggactg
ccagggcccatggggccacccggcttacctgggcctccaggaccaaagggagacccagga
atccagggttaccacggccgaaagggagaacgaggcatgccggggatgccgggcaaacac
ggagccaagggggctcccggaatcaccgtggcggggatgaagggtgagccggggacccca
ggagccaagggcgaaaagggggctgcaggctcccccgggctgctcggcctcctggggcag
aagggagaaaaaggcgacgctggcaactcctttggagggggcagaggggagcccggcccc
ccagggctacctgggcccccaggcccaaagggagaagctggtgttgatggccaggctggc
cccccaggacggcaaggagacaagggtgagcccggagcagccggagaacagggactggct
ggccccaagggcagcaagggggaaccaggcaaagaaatggtggactacaatgggaacatc
aacgaggctctccaggagatccgaacgctggccttgatggggccccctggtcttcccggg
caaatcggcccacccggagccccggggatcccaggccagaagggggagattggacttcca
ggccctccaggacacgatggggaaaagggacctcgaggcaaaccaggcgacatgggccct
cccggtccccaaggccccccaggaaaggctgggcccacaggaatgaagggtgaagacgga
cacgtggggagcccgggagaaaagggggagaaaggggagacggggcaaacaggcccaccg
ggtctagacggcccaactggggagaaaggagaaccaggtggccaagggagacccggaaca
acaggattgcccggcccgatcgggctcccgggatttacaggggagaaaggagagcccggg
gagaagggagacccaggagtggaggttcctgggcccccagggccagaggggcctcccgga
cctccgggactccaaggtgttcctggaccaaagggggaagcgggactggatggagcaaaa
ggagagaagggtgtccagggagagaaaggagaccgagggccgctgggattacccggagct
tcaggtttggacggcaggcctgggccaccgggtactccaggaccagtcggagttccaggc
ccagcgggaccaaagggcgagaggggcagcaaaggcgaccttgggatgacaggaccatca
ggagcggctgggcttcctggtttacatggaccacccggggacaaaggaaaccggggacac
cgaggttttaaaggagagaaaggggagccggggttaccagggctggacggactggatgcc
ccgtgcccattggtatggcatcaccctccctcgcctgcatggccgactcaggcttcccca
cgtgtgtggttcttgcccgcatgcctctccagccgccctcctcacgcctcctgccccatc
cactcagtctccacctcctgccccttctctctgtag
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