KEGG   Lynx rufus (bobcat): 124507640
Entry
124507640         CDS       T08475                                 
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
  KO
K17589  RB1-inducible coiled-coil protein 1
Organism
lruf  Lynx rufus (bobcat)
Pathway
lruf04140  Autophagy - animal
lruf04211  Longevity regulating pathway
lruf05010  Alzheimer disease
lruf05014  Amyotrophic lateral sclerosis
lruf05016  Huntington disease
lruf05017  Spinocerebellar ataxia
lruf05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:lruf00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    124507640
 09150 Organismal Systems
  09149 Aging
   04211 Longevity regulating pathway
    124507640
 09160 Human Diseases
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    124507640
   05014 Amyotrophic lateral sclerosis
    124507640
   05016 Huntington disease
    124507640
   05017 Spinocerebellar ataxia
    124507640
   05022 Pathways of neurodegeneration - multiple diseases
    124507640
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:lruf01009]
    124507640
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lruf04131]
    124507640
   03029 Mitochondrial biogenesis [BR:lruf03029]
    124507640
Protein phosphatases and associated proteins [BR:lruf01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     124507640
Membrane trafficking [BR:lruf04131]
 Autophagy
  Autophagosome formation proteins
   ULK complex
    124507640
Mitochondrial biogenesis [BR:lruf03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Parkin-independent mechanism factors
    124507640
SSDB
Motif
Pfam: ATG11 ATG17_like TBK1_ULD ubiquitin Jag_N
Other DBs
NCBI-GeneID: 124507640
NCBI-ProteinID: XP_046929877
LinkDB
Position
Unknown
AA seq 1593 aa
MKLYVFLVNTGTTLTFDTELTVQTVADLKHAIHSKYKIAIQHQVLVVNGGECMAADRRVC
TYSAGTDTNPIFLFNKEMILCDRPPAIPKTTFSTENDMEIKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSNYLQ
SIEDIKLKLTHLGTAVSVMAKIPLLECLTRHSYRECLGRLDSLPEHEGSEKAEMKTSTEL
VLSPDMPRTTNQSLLTSFHKSVEHVAPDTTDAESGKEMRESCQSTVPQDETSVDAKDGDL
PFFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPRIIRPFIAECRQTIAKLDNQNMKA
IKGLEDRLYALDQMIASCSRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQLM
IMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELLE
RVKIVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKRLYEAEKSKRESFGKL
FRKSFLRNRLFKGLDSWPPSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRVPL
LCDFEPLHQHVLALHNLVKAAQSLDEMSQTITDLLSEQKASMSQVSPQSASSPRIESTAG
IATTTSPRTPPPLAVQDPLCPAVCPLEELSPDSIDAHTFDFETIPHPNIEQTIHQVSLDL
DSLAESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQDTN
VCGKEDLGDHASLSVQLEKCRLVARDSHFSIQTIKKDLCHFRTFVQKGQCDFSNSLKCTA
LEIRNVIEKVRYSLEMTLNEKHQKELQSLKSEYEDRLAALRKESEENENKIKKLKGDLAC
LEEVLQNKDNEFALVKHEKEAVICLQNEKDQKLLEMESLMRTQSCEIDELKHSRETVLED
LQKLHVENDEKIQLLRTELQGLEQRHLKELEDALHARHMQEVEKAKTDHGASLEKLKKEN
QHRIDQIQESHAAAIQEKEQQLQELKLKVSDLSDVRCKLEVELALKEAETDEIKILLEES
RAQQKETLKSLLEQETENLRTEISKLNQKIQDNNESYQVGLAELRTLMTIEKDQCISELI
SRHEEESDLLKAELNQVTSLHHQAFEVEKNLKEEIAELQSKLDAELSALEKQKEEKLTQQ
EEKYEAIIQKLEKDKEKFVMSQEQDRERLIQKLNCEKEEAIQTALKEFKLEREAVEKELL
EKVKHLENQIAKSLATESTREDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVR
TSLIAEQQTNFNTVLTREKMRKENIINDLNDKLKSTMQQQERDKDLIESLSEDRARLLEE
KKKLEEEVSKLRGGSFVPSPYVAAAPELYGACAPELPGEPERSGPETQDEGKADSAMETS
TMSVQENIHMLSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSMSSVSSRHSEKIAIRDF
QVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGEGASGASRRPWVLGKVME
KEYCQAKKAQNRFKVPLGTKFYRVKAVSWNKKV
NT seq 4782 nt   +upstreamnt  +downstreamnt
atgaagttatatgtatttctggttaacactggaactaccctgacatttgacactgaactt
acagtgcaaactgtggcagacctcaagcatgccattcacagcaaatacaagattgctatt
cagcatcaggtgctggtggtcaacggaggagaatgcatggctgcggaccgaagagtgtgc
acctacagtgctgggacggacacaaatccgatttttctttttaacaaagagatgatctta
tgtgatcgtccacccgctattccgaaaacgaccttttcgacagaaaatgacatggaaata
aaagttgaagaatctcttatgatgcctgcagtttttcacaccgttgcgtcaaggacacaa
cttgcagtggaaatgtatgaagttgccaagaaactttgctctttctgtgagggtctggtc
catgatgaacaccttcaacaccaaggctgggctgcaatcatggccaatctggaggactgt
tcaaattcttaccaaaagctacttttcaagtttgaaagtatttattcaaattatctgcaa
tccatagaagacatcaagttaaaacttactcatttaggaactgcggtttccgtcatggcc
aagattccgctgttggagtgcctaaccagacatagttacagggaatgtttgggaagactg
gattctttgcctgaacatgaaggctcagaaaaggctgaaatgaaaacctccactgaactg
gtgctctctcctgatatgcctagaacaactaaccagtctttgttaacctcatttcacaag
tcagtggaacacgtagccccggataccacagatgctgaaagtggaaaagaaatgagggaa
tcttgtcaaagtactgtcccgcaggatgaaacttcagtagatgctaaagacggtgatctg
cctttttttaatgtttctttgttagactggataaatgttcaagatagacctaatgatgtg
gaatcattggtcaggaaatgctttgattccatgagcagacttgatccaaggattattcga
ccatttatagcagaatgccgtcaaactattgccaaacttgataatcagaatatgaaagcc
attaaaggacttgaagaccggctctatgccctggaccagatgatcgctagctgcagccga
ctggtgaatgaacagaaggaactcgctcagggatttttagctaatcagatgagagctgaa
aacttgaaggatgcatctgtattacctgatttgtgcctgagtcacgcaaatcagttgatg
attatgttgcaaaatcatagaaaactgttggatattaaacagaagtgtaccactgccaaa
caggagctagcaaataacctacatgtcagactgaagtggtgttgctttgtgatgcttcat
gctgatcaagacggagagaaattgcaagctttgctccgcctcgtaatagaactgttagaa
agagtcaaaattgttgaagctcttagtacagttcctcagatgtactgcttagctgttgtt
gaggttgtaaggagaaaaatgttcattaaacactacagggagtgggctggtgctttggtg
aaagatggaaagcgattatacgaagctgaaaagtcaaaaagggaatcctttgggaaattg
tttaggaagtcctttttaagaaatcgtctgtttaagggattggactcctggcccccgtcc
ttttgtacacagaagcctcgaaagtttgactgtgaacttccagatatctcattaaaagat
ctacagtttctgcaatcattttgtccttcagaagttcagccattcctcagggttccctta
ctttgtgattttgaacctctacaccagcatgtacttgctctacacaatttggtaaaagca
gcacaaagtttggatgaaatgtcacagaccattacagatctactgagtgaacaaaaggca
tccatgagtcaggtatccccccagtcggcttcctcaccaaggatagaaagtacagcagga
attgcaactactacctcaccgagaactcctcctccgctcgccgttcaggatcccttgtgt
cctgcggtgtgtcccttagaagaattatctccagatagcatcgatgcacatacctttgat
tttgaaactatccctcatccaaacatagaacagactattcatcaagtttcattggactta
gattcattagcagaaagtcctgaatcggattttatgtctgctgtgaatgagtttgtaata
gaagaaaatttgtcatctcctaatcctataagtgatccacagagtccagaaatgatggtg
gaatcgctttattcatcagtcatcaatgccatagacagtagacggatgcaggatacaaac
gtatgtgggaaagaggatttaggagatcatgcttctctaagtgtccaattggaaaagtgc
cgacttgttgcccgagactcacatttcagtatacagaccatcaagaaagacctttgccac
ttcagaacatttgtccagaaaggacagtgtgacttctcaaattctttaaaatgtacagca
ttagaaataagaaacgttattgaaaaggtaagatattctctggaaatgacactaaatgaa
aaacatcaaaaagaactgcagtctttaaaaagcgagtatgaagacagacttgctgcactc
agaaaggagagtgaggaaaacgaaaacaaaattaaaaagctgaaaggagacttggcgtgc
ctcgaggaggttttacaaaacaaagataacgaatttgctctggttaaacatgaaaaagaa
gccgtcatctgcctgcaaaatgagaaggatcagaagttgctggagatggaaagtctcatg
cgcactcagagctgcgaaatcgacgagctgaaacactcgcgggagaccgttctggaagac
ctgcagaagctccacgtggaaaatgatgagaagattcagttgttgcggacggagctccag
ggcttagagcagcgtcacctcaaggagctcgaggacgctctgcacgccaggcacatgcag
gaggtcgagaaggctaagaccgaccacggggcgtctttggagaaactgaagaaggagaat
cagcacagaatcgaccagatccaggagtctcatgccgccgctatccaggagaaagaacaa
cagctccaggaattaaaactcaaagtttccgatctgtcggacgtgagatgtaagttagag
gttgaacttgcattgaaggaagcagaaaccgatgaaataaaaattttgctggaagaaagc
agagcccagcagaaggagaccttaaaatctctccttgaacaagagacagaaaatttgaga
acagagataagtaaactcaaccaaaagattcaggataataatgaaagctaccaggtgggc
ttggcagaactaagaactttaatgaccattgaaaaagatcagtgcatttcagagttaatt
agtagacacgaagaagaatctgacctgctgaaagctgaattaaaccaagtaacatccttg
caccaccaagcatttgaagtggaaaaaaacctgaaagaagaaatagctgaactgcagagt
aaactggatgcggaattgagtgctcttgaaaagcaaaaagaggaaaaactcacccagcag
gaagagaagtatgaagctattatccagaaacttgagaaggacaaagagaaatttgtcatg
agccaggaacaagacagagaacggttaattcagaagcttaattgtgaaaaagaagaagct
attcagactgccctaaaggagtttaaattggagagagaagctgttgagaaagagttatta
gaaaaagttaaacatcttgagaatcaaatagcaaaaagtcttgccactgaatctaccaga
gaagattcttcaagcctagtcgctgaacttcaagaaaagcttcaggaagaaaaagcaaag
tttctagaacaacttgaagagcaagaaaaaagaaagaatgaagaaatgcagaatgttcga
acatctctgattgctgaacaacagaccaactttaacactgttttaacaagagagaaaatg
agaaaagaaaacataatcaacgatcttaatgataagctgaaaagtacaatgcaacagcaa
gagcgagataaagatctgatagagtcgctgtctgaagatcgagctcgattgcttgaggaa
aagaaaaaactggaggaagaagtcagcaagctgcgcggcggcagttttgttccctcgccc
tacgtcgccgcggccccggaactttacggagcatgcgcaccggaactgccaggcgagcca
gagaggtcaggcccggaaacgcaagacgaaggcaaagccgactcggcgatggagaccagc
acgatgtctgtacaagaaaatatccatatgctatctgaagaaaaacagagaataatgctg
ttagaacgaacattacaattgaaagaagaagaaaacaagcggttaaatcaaagactgatg
tctcagagcatgtcttcggtatcctcaaggcattcggaaaagatagctattagagatttt
caggtgggagatttggtgctcatcattctggacgagcgccatgacaattacgtgttattt
accgttagtccaaccttgtatttcctgcattcggagtctctgcctgccctggatctgaaa
ccaggtgagggtgcttcaggtgcatctcgaagaccctgggtacttggaaaagtaatggaa
aaggaatactgtcaagccaaaaaggcacaaaaccgattcaaggttcctctggggacaaag
ttttacagagtgaaagctgtgtcatggaataagaaagtataa

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