Lynx rufus (bobcat): 124508676
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Entry
124508676 CDS
T08475
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf04140
Autophagy - animal
lruf04142
Lysosome biogenesis
lruf04148
Efferocytosis
lruf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
124508676
04140 Autophagy - animal
124508676
04148 Efferocytosis
124508676
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
124508676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lruf04131
]
124508676
Membrane trafficking [BR:
lruf04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
124508676
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
TPR_Vps41
zf-Vps39_C
Clathrin
VPS18_solenoid_2nd
Beta-prop_RIG_2nd
LIF1_N
Beta-prop_WDR36-Utp21_1st
DUF4145
Lgl_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
124508676
NCBI-ProteinID:
XP_046931206
LinkDB
All DBs
Position
Unknown
AA seq
921 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDAGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLEHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLVENFKSLAIPYLEHVIHVW
EETGSQFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEYRRKLLIFLEIS
GYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTKMAEEYCHKHYDQNK
DGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNRQLQRIYYLLGWEEVTKGSVLPLYTNHLIKKSVSRVRNPEIVYSEFSVKA
HAGLCMEPPAQLAWGLEGEQS
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgccttcgagccagtgccgatcctggaaaagctgcctctgcagatcgactgt
ctggctgcctgggaggaatggcttcttgttggcaccaaacaaggacatcttcttctctat
aggatccggaaagatgctggttgcaacaggtttgaagtgacactagagaaatccaataaa
aacttctccaaaaagattcaacagatccatgtggtttcccagtttaagattctggtcagc
ttattagaaaataacatttatgtccatgacctgttgacatttcaacaaatcactacggtt
tcaaaggcaaagggagcatcactgttcacatgtgaccttgagcacacagagactggtgag
gaggtgttgcggatgtgtgtggcagtgaaaaagaagctgcagctctatttctggaaggac
agggaatttcacgaattgcagggggactttagtgtaccagatgtgcccaagtccatggca
tggtgtgaaaattctatctgtgtgggtttcaagagagactactacctaataagggtggat
ggaaaggggtccatcaaagagctctttccaacaggaaaacagctggagccgttagttgca
cctctggcagatggaaaagtggctgtgggtcaggatgatctcaccgtggtgctcaatgag
gaggggatatgcacacagaaatgtgccttgaactggacagacataccagtagccatggag
caccagcctccctacatcattgcagttttgcctcgatatgtggagatccgaacattcgaa
ccgaggcttctggtccagagtattgaattgcaaaggccccgcttcattacctcgggagga
tcaaatattatctatgtggccagcaatcattttgtttggagactcattcctgtccccatg
gcaacccaaatccaacagcttctccaggacaagcagtttgaactggctctacagcttgca
gaaatgaaagatgattccgacagtgaaaagcagcaacagatccatcacattaagaacttg
tatgccttcaacctcttctgccagaagcgttttgatgagtccatgcaggtctttgctaag
cttggcacagatcctacccatgtgatgggcctgtacccggacctgctgcccacagactac
aggaaacagctacagtaccctaacccactgcctgtgctctcgggggctgaattggagaag
gcacacttagctctgattgactacctgacacagaaacgaagccaactggtaaagaagctg
aatgactctgatcaccagtctagcacctccccgcttatggaaggcactcccaccattaaa
tccaagaagaagctgttgcaaatcatcgacaccaccttgctcaagtgctacctgcatacg
aacgtggccctggtggcccctctgctgcgcctggagaacaatcactgccacatcgaagag
agtgagcatgtgctgaagaaggcgcacaagtacagcgaactgataatcctgtatgagaag
aaggggctccacgagaaagctctgcaggtgctggtggaccagtccaagaaagcaaactcc
cctctgaaaggccatgagaggaccgtgcagtatctgcaacatttgggcacagaaaacttg
catttgattttttcctactcagtgtgggtgctgcgagacttcccagaggatggcctgaag
atatttaccgaagatctcccagaggtagagtccctgccacgagaccgagtgcttggcttc
ttggtggagaattttaagagtctggctattccttatctggaacatgtcatccacgtttgg
gaggagacaggctctcagttccacaactgcctaatccagctgtactgtgagaaggtgcaa
ggtctgatgaaggagtatctcctgtccttccctgcaggcaaaactccagttcctgctgga
gaggaagaaggtgagctgggagaataccgacggaagctccttatattcttggaaatttct
ggctactatgatccaggccggctcatctgtgacttcccttttgatggcctcttagaagag
cgcgcactgctgctggggcgcatggggaagcatgagcaagccctcttcatctacgtccac
atcctgaaggacacaaagatggctgaggagtactgccacaagcattatgaccaaaataaa
gatggcaacaaagatgtgtatctgtccctgctccggatgtacctgtcaccccccagtgtt
cactgcctgggaccaatcaagctggaactgctggagccacaagccaacctccaggctgcc
ctgcaggtcctcgagctgcaccacagcaagctggacaccactaaggccatcaaccttctc
ccagcaaacactcagattaatgatatacgcatctttctggaaaaggtcttggaagaaaat
gcacaaaagaaacggttcaatcaagtgctcaagaaccttctccatgcggaatttctgagg
gtccaggaagagaggattttacaccagcaggtgaagtgcatcatcaccgaggagaaggtg
tgcatggtgtgtaagaagaagatcgggaacaggcagttgcagagaatttactacctgctt
ggatgggaggaggtgacgaagggcagtgtcctgcctttgtacaccaatcacctgatcaag
aaaagtgtctcaagagtccgtaaccctgagattgtttattcagagttttctgtgaaggca
catgcaggactttgcatggagccccctgcgcagttggcttggggtctggaaggagagcag
tcctag
DBGET
integrated database retrieval system
