Lynx rufus (bobcat): 124510148
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Entry
124510148 CDS
T08475
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124510148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lruf03019
]
124510148
Messenger RNA biogenesis [BR:
lruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
124510148
mRNA cycle factors
Common to processing body (P body) and stress granule
124510148
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
124510148
NCBI-ProteinID:
XP_046932837
LinkDB
All DBs
Position
Unknown
AA seq
1161 aa
AA seq
DB search
MFLQIVIVGENVSFKSQMRTGNLKSEEHLKSSNIRQAEVLKADMTDSKLGPAEVWTSRQA
LQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFL
EAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCL
VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV
KFPFPAASTNLQKALSKALESRDEVKTKWSVSDFIKAFIKFHGHVYLSKSLEKLSPLREK
LEEQFKRLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALF
MSFLGILCKCPLQNKSQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLIS
LLNSFHPHEEDLSSTNATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQRQIR
QQRLISIGKWIADNQPRLIQCENEVGKLLFITEIPELILEDPSEAKENLILQETSMIESL
AADGNPGLKSVLSTGRNLSNNCDTGEKPMVTFKENIKPREVNRDQGRSFPPKEVRRDYSK
GITVTKNDGKKDNNKRKTETKKCTLEKLQETGKQNVAVQVKSQTELRKTPVSEARKTPVT
QTPSQASNSQFIPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTF
LQPTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQPQPPSQQPLTSLPAQPTAQS
TSQLQVQALAQQQSPTKAVPALGKSPPHHSGFQQYQQADASKQLWNPPQVQGPLGKIMPV
KQSYYLQPQDPIKLFEPSLQPPVMQQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWDSSYS
MADNRAVMAQQASVDRRGKRSPGVFRPEQDPVPRMPFEKSLLEKPSELMSHSSSFLSLTG
FSLNQERYPNNSMFNEVYGKNLTTSSKTELNPSLAPQETSLYSLFEGTPWSPSLPASSDH
STPASQSPHSSNPSSLPSSPPTHNHNSVPFSNFGPIGTPDNRDRRTADRWKTDKPAMGGF
GIDYLSATSASESSWHQASTPSGTWTGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALE
QLLMQQKQKQQRGQGAMNPPH
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgttcttgcagatagtcattgtgggagaaaacgtttcatttaagtcccagatgaggacc
ggaaacttgaaatcagaggagcatctgaaatcaagtaatattaggcaggcagaagtcctg
aaggctgacatgacagattctaagctgggtccagctgaggtctggacatccaggcaggct
ctgcaggacctgtaccagaaaatgctagttactgatttggaatacgctttagacaagaaa
gtagaacaggatctctggaatcatgcctttaagaatcagatcacaacactacaaggccag
gcaaagaatcgagcaaacccgaatcggagtgaagttcaggcaaacctatctctgttccta
gaggcagctagtggcttctatactcagttattacaagaactgtgtacggtgtttaatgta
gatttaccatgccgtgtgaagtcttcccaattgggaattatcagcaataaacagacgcat
accagcgccatagtgaagccacagtctagctcctgttcctatatctgccagcactgcctc
gtccaccttggagacattgctcgatacagaaaccagaccagccaggcagagtcctactat
aggcatgcagctcagcttgtcccctctaatggtcagccttacaatcagttggctatctta
gcttcttccaaaggagaccatctgaccacaattttctactactgcagaagcatcgctgtg
aagttcccgttcccagctgcctccactaatctacaaaaagcactttctaaagcactggaa
agccgggatgaggtgaaaaccaaatggagtgtttctgacttcatcaaggcctttattaaa
ttccacggtcatgtgtacctgagtaagagcttggaaaagttgagcccacttcgagagaaa
ttggaagaacagtttaagaggctgctgttccaaaaagctttcaactctcagcagttagtt
cacgtcactgtcatcaacctgtttcaacttcatcaccttcgtgactttagcaatgaaaca
gagcagcatagttatagccaagatgagcagctgtgttggacacagttgctggccctcttt
atgtcttttcttggcatcctgtgcaagtgtcctctccagaacaagtctcaggaggagtcc
tacaatgcctatccccttcctgcagtcaaggtctccatggactggctgagactgagaccc
agggtctttcaggaggcagtggtagatgaaagacagtacatttggccctggctaatttct
cttctaaatagtttccatccccatgaagaggatctttcaagtactaatgctacaccactt
ccagaggagtttgagttacaaggattcttggctttgagaccttctttcaggaacttggat
ttctccaaaggccaccagggtattacaggagacaaagaaggtcagcaacgacaaatacga
cagcagcgcttgatctctataggcaaatggattgctgataatcagccaaggctgattcag
tgtgaaaatgaggtagggaaattgttgtttatcacagaaattcctgagttaatactggaa
gaccccagtgaagccaaagagaacctcattctgcaagaaacatccatgatagagtcactg
gctgcggacgggaacccaggactgaaatcagtgctgtccacgggccgtaatctaagcaac
aactgtgacacaggagagaaaccaatggtcaccttcaaagagaacattaagccgcgcgaa
gtgaacagagaccaaggaagaagttttcctcccaaagaggtgagaagggactatagcaaa
ggaataactgtaactaagaatgatggaaagaaggacaacaacaagaggaaaacagaaacc
aagaaatgcaccttagaaaagttacaggaaacaggaaagcagaatgtggcagtgcaggtg
aaatcccagacagaactaagaaagactccagtgtctgaagccaggaaaacacctgtaact
caaaccccaagtcaagcaagtaactcccagttcatccccattcatcaccctggagccttc
cctcctcttcctagccggccagggttcccgcccccaacatatgttattccccctcctgtg
gcattttctatgggctcaggttacaccttcccagctggtgtttctgtcccaggaaccttt
cttcagcctacagctcactctccagcaggaaaccaggtgcaagctgggaaacagtcccac
attccttacagccagcaacggccctctggaccagggccaatgaaccagggacctcaacag
ccacagccaccttcccagcaaccccttacatctttaccagctcagccgacagcacagtcc
acaagccagttgcaggttcaagctctagctcagcagcaatcccccacaaaagccgtgccg
gctttggggaaaagccctcctcaccactctgggttccagcagtatcaacaggcagatgcc
tccaaacagctgtggaatccccctcaggttcaaggcccattagggaaaatcatgcctgtg
aaacagtcctactaccttcagccccaagaccccataaaactgtttgagccgtcattgcaa
cctcctgtaatgcagcagcagcctctagagaaaaaaatgaagccttttcccatggagcca
tataaccataatccctcagaagtcaaggtcccagagttctactgggattcttcctacagc
atggctgataacagagctgtcatggcccagcaagcaagtgtggaccgcagaggcaaacgg
tcaccaggagtcttccgtccagagcaggatcctgtgcccaggatgccatttgagaaatcc
ttgttggagaagccctcggagctcatgtcacactcatcctctttcttgtccctcaccgga
ttctctctcaatcaggaaagatacccaaataacagtatgttcaatgaggtatatgggaaa
aacctgacaaccagctccaaaacagaacttaatccttcgctggccccccaggagacatca
ctgtactccctctttgaagggaccccgtggtctccatcacttcctgccagttcagatcat
tcaacaccagccagccagtctccccattcctcaaacccaagcagcctgccgagctcccct
ccaacacataaccataattctgttccattctccaactttggacctatcgggactccagat
aacagggataggagaactgcagatcggtggaaaactgataagccagccatgggtgggttc
ggcattgattatctctcagcaacatcagcctctgagagcagttggcatcaggccagcact
ccaagtggcacctggacaggccacggcccctccatggaggattcctctgctgtcctcatg
gaaagcctaaagtctatctggtccagttccatgatgcatcctggaccttccgctctggag
cagctgttaatgcagcagaaacagaaacagcagcggggacaaggcgccatgaaccctcca
cactga
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integrated database retrieval system
