Lynx rufus (bobcat): 124511314
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Entry
124511314 CDS
T08475
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
lruf
Lynx rufus (bobcat)
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lruf03036
]
124511314
Chromosome and associated proteins [BR:
lruf03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
124511314
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
124511314
NCBI-ProteinID:
XP_046934356
LinkDB
All DBs
Position
Unknown
AA seq
2902 aa
AA seq
DB search
MTDPMMDFFDDANLFGETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQGTP
THQKITDYEQLNQFDSMKFHQVNQPFGSPAEHVLSPHSQFNCSPIHPPNQPNGLFPDVAD
GSPMWGHQTATSISNQNGSPFHQQGHSHPMHPNKSFVVHHDFALFQASEQQTQCTSLRSQ
QNRNSLNPGQNSLSQSKNFMDVNVSGPHRVSVSHPSQITNASTSQQSLSMQQFSQTSNPS
VHFLKCSNHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSSNHVSPNSLLQSSAVLAPNHT
NQALSDFTGSNSFSPHRGIKQDSTQHMLNPNTSLNSSNFQMLHSSHPQGNYSNSKLSPVH
MNFPDPVDSGTQMGHFNDHVETNGFSSLEENLLHQVESQTEPFTGLDPEDLLQEGLLPQF
DEATFGQDHSSHVLDHDLERQFTSHLVTRPSEMAQTQLHSPARSWHSSLSNHQHLHDRNR
LYLQRQPPSSKKSDGSGTYTKLQNTQVRIMSEKKQRKKVESESKQEKANRIISEAIAKAK
ERGERNIPRVMSPENFPSASVEGKEEKKGRRMKSKPKDKESKKTKTCSKLKEKTKIGKLI
ITLGKKQKRKNESSDEISDTEQMPRHTLKEEDPQKRRSNRQIKRKKYAEDAEGKQSEEEL
KGSMKIKKNSAPLPGEQPLQLFVENPSEEDAAIVDKILSSRITKKEVSPGVMIDTEEFFV
KYKNYSYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRV
LEVSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRPDTRHLD
RPPANIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITF
LYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDS
QGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNL
EHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMM
LRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMM
ELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGG
HKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCT
RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFD
RASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEED
IDQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAIS
GRNSLVIDTPRIRKQTRPFSATKDELAELSEAESEGDEKPKLRRPCDRSNGYGRTECFRV
EKNLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKGFIWDLIT
PTEDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLLQDEGYKK
HIKHHCNKVLLRVRMLYYLKQEVIGNECQKVFDGVDASDIDVWVPEPDHSEVPAEWWDFD
ADKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYK
PAPAIFKDDMEDDVSSPGDLVIADGDGQLMEGDKIYWPTQSALTTRLRRLITAYQRTNKN
RQIQQIQPTFSVPASVMQPLYEEATLNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFD
PDRGQFDWTKFRAMARLHKKTDDSLEKYLYAFMSMCRRVCRLPSKEELVDPNIFIQPITE
ERASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPVWWECGPHDRDLLIGAAKHG
VSRTDYHILRDPELSFMAAQRNYSQSKMAPSRTSTPLLQQYQVALSASPLTSLPRLLDAK
GIILEDMKVKSENLKEEPQSSEEESMSSEETRTLIKSEPVSPKNGVLPQATGDQKSGGKG
ETDRRMVAARTEPLTPNPASKKQRVHKRGSESSSESDSDSERSSCSSRSSSSSSSSSSCS
DSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEEVPKRAEGTPHVKAYD
EESVASLSTTQDETQDSFQMNNGTPESAYILQGGYMLAASYWPKDRVMINRLDSICQTVL
KGKWPSARRSYDANTVASFYTTKLLDSPGAATEYSEPSVPTPPGAGVKEEHDQSTQMSKV
KKHVREKEFTVKIKDEGGLKLTFQKQGLAQKRPFDSEDSALGQQQYLARLRELQSASETS
LATFPKSVPVSGTSIQSSLGANGVRLDNQPIVKKRRGRRKNVEGVDILFFNRNKPPNHVT
VGLTSSQISTGINPALSYTQPQGIPDTESPVPVINLKDGTRLAGDDAPKRKDLEKWLKEH
PGYVEDLGAFIPRMQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAF
APPLKDLCRFLKENSEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKS
GIAKATAAATATTASGVSGNPLSANGLLPGVDLTTLQALQQNLQNLQSLQVTAGLMGMPA
GLSSGGEAKNVAAMFPMLLSGMTGLPNLLGMGGLLTKPTESGTEEKKGNDPKELEGKKER
TESQNSENGGENSVSSSPSTSSTAALNTAAAANPLALNPLLLSNILYPGMLLTPGLNLHI
PTLSQSNTFDVQKNKNSDLGSSKSIEVKEEDSRVRDQEDKGGTEPSPLNENSTDEGSEKA
DASSGSDSTSSSSEDSDSSNED
NT seq
8709 nt
NT seq
+upstream
nt +downstream
nt
atgacagatccaatgatggacttttttgatgatgccaatctttttggtgagaccttagaa
ggtttgtcagatgatgcatttgtacagccaggacctgtttcactagtcgatgaattgaac
ctgggtgcagaatttgaacctttgcacatagactcactcaaccatgttcaaggtactcca
acacatcagaagataactgattatgagcagttaaatcagtttgattcaatgaaatttcac
caggtcaatcagccttttggtagcccagctgaacacgtgttatctccacactctcagttt
aattgttctccaatccatcccccaaaccaacccaatggtttgtttccagatgtagcagat
ggcagtccaatgtggggccatcagacagctaccagcatttcaaatcaaaatgggtctccc
ttccaccaacaaggacattctcaccctatgcatccaaataaaagctttgtggtacaccat
gactttgccttatttcaggccagtgaacaacaaacacagtgcacttcactacgctcacag
caaaacagaaacagtcttaacccagggcaaaattctcttagccagtctaaaaattttatg
gatgttaatgtttctggtccacacagagtcagtgttagccacccatcacaaattacgaat
gcatctacgtcgcaacagtctctttcaatgcagcaattttctcaaacatcaaatccttca
gtacacttcctcaagtgtagcaatcaccaagaagggaattttaatggaccttctccaaat
atgacttcttgttctgtcagtaattcacagcagttttcttcacattattccttttccagt
aatcacgtctcacccaacagtcttctgcagtcctctgctgttcttgcacctaatcataca
aatcaggctttatcagattttactggaagtaattccttttcacctcataggggaatcaag
caagactccactcagcatatgctaaatcccaatacatcgttgaattcaagtaatttccaa
atgttgcattcatcacatcctcagggtaattatagcaattcaaaattatctcctgtgcac
atgaacttcccagatcctgttgactcaggaactcaaatgggccatttcaatgatcacgta
gaaactaatggcttttcatctttagaagagaatttacttcatcaagtagagtctcaaact
gagccattcacgggacttgacccagaagacctcctgcaggagggtctccttccccagttt
gatgaggcaacatttggacaggatcattcaagtcatgttttagatcatgaccttgaacgg
cagtttacttcacatctggtaactcggccttcagagatggctcaaactcagttgcacagt
ccagctcgcagttggcattcatcactttcgaatcatcagcatttacatgacagaaatcgc
ctatatttacagcgacagcctccatcttccaagaagagtgacggttctgggacatacact
aagttgcagaatacccaggtgaggatcatgtctgagaagaaacagagaaaaaaggtggaa
tcagaaagcaagcaagaaaaggctaatcggataatatcagaggccatagcaaaagcaaag
gaacgtggggaacgcaatattccacgagtaatgagtcctgagaactttcctagtgcttca
gttgaaggaaaagaggaaaagaaaggtagacggatgaaatccaagccaaaggacaaagag
agcaaaaaaacaaaaacttgttcaaagttgaaagagaagacaaaaattggcaaactcatt
attacgttgggtaagaaacaaaaaagaaagaatgagtcttcagatgaaatatctgataca
gagcagatgccacggcacacactcaaagaggaagaccctcaaaaaagaagatcaaatcgt
caaattaaaagaaaaaaatatgcggaagatgcagaagggaaacaatctgaagaagagctc
aaaggttctatgaaaataaaaaagaattcagctcctttacctggtgaacagcctttacag
ttatttgtggagaatccaagtgaagaagatgccgcaatcgtggataaaatcctgtcttct
agaattacaaaaaaggaagtgtcacctggagtgatgattgatacagaagaattttttgta
aaatacaagaattactcctatcttcactgtgagtgggccacagaacagcagcttttgaaa
gataaaaggatccagcagaaaatcaaacgattcaaactgagacaagcacaaagagcacat
ttttttgcagacatggaagaggaaccatttaacccagactacgttgaagtagacagagtg
ttagaagtctctttttgtgaagataaagacactggtgagcctgttatttactacttagta
aagtggtgctcattaccgtatgaagatagtacttgggaactaaaagaagatgtagatctt
gcaaaaatagaagagtttgaacagttacaagcttcaaggcctgacacaagacatttggat
cgtcctcctgctaatatttggaaaaaaattgatcaatccagggactataaaaatggcaat
caactcagggaatatcaactggaaggactcaactggctcttattcaattggtacaataga
cgaaactgcattttagccgatgaaatgggtcttggcaaaaccattcagtcaattacattc
ctctacgaaatccttctgactggtataagaggacctttcctgattatcgctccactttct
actattgcaaactgggagagagaattccgtacatggactgatattaatgttgtggtttac
catgggagcctgattagcagacagatgatacagcaatatgagatgtacttcagggactca
caggggcgtatcattcgaggagcttacagattccaagccatcatcaccacttttgaaatg
attcttggtggctgtggagagctaaatgcaattgaatggcgatgtgtgattattgatgaa
gcacataggttaaagaataaaaattgtaaacttcttgaaggtctgaaactcatgaatctg
gaacacaaggtgcttttgactggtacacctctccaaaatacagttgaagaactattcagt
cttcttcacttcctagaacctttaaggtttccttccgaatcaacatttatgcaagaattt
ggggatctgaaaacagaagaacaggtgcaaaaacttcaggctatcctgaaacccatgatg
ttgaggcgattgaaagaagatgtggagaagaagctggcaccaaaggaagaaaccatcatt
gaagtggaacttactaacattcaaaagaaatactaccgggctattttggagaagaacttc
tcctttttatccaaaggggcagggcagaccaatgtacctaacttggtcaataccatgatg
gagctcaggaagtgctgcaatcatccgtatcttatcaaaggtgctgaagagaaaatactt
ggagaatttagggatacgtacaatccagctgcttctgattttcatcttcaagcaatgatc
cagtctgctggtaaactggtccttattgataaattgcttcccaaaatgaaagctggaggt
cataaagtgctcatcttctctcagatggtacgctgccttgacatcctagaggactatctc
attcataaaagatatttatatgagcgaattgatggaagagtcagagggaacctgcgacaa
gctgctatagatcgatttagtaaacctgattcagatcgatttgttttccttctgtgcacc
cgagctggtgggttgggcatcaacttaactgctgctgatacatgtataatttttgattct
gattggaaccctcagaatgacctgcaggcccaagctcgttgccacagaattggtcagaat
aaagcagttaaagtctaccgactagtaactcgtaactcctatgagagagagatgtttgac
cgagccagtctgaaactgggtctagataaggctgtgttacagagcatgagtggaagagaa
agtaatgttggtggtattcaacagctttccaaaaaggaaatagaagatctgcttcgaaga
ggtgcatatggtgctattatggaggaagaagatgaaggctctaaattctgtgaggaggat
atcgatcagattttactacgtcgtacaaaaactatcacaattgagtcagaaggacgtggg
tcaacatttgccaaggcaagttttgtggcatctggaaatcggacagatatttccttagat
gatcctaacttctggcagaaatgggctaaaaaggcagaaatagatatagatgccatcagt
ggcagaaacagcttggttattgacactccaagaattaggaagcaaacaagaccctttagt
gccacaaaagatgagttggcggaattatctgaagccgaaagtgaaggggatgaaaagccc
aaactccggagaccctgtgatcgttccaatggctatggaagaactgaatgctttagagta
gagaaaaatcttctagtttatggatggggccgatggagagagattctgtctcatggtcgt
tttaaaaggcagctgaatgagcatgatgtagaaataatttgccgagccctcttagcttat
tgccttgttcactaccgaggagatgagaaaattaaaggcttcatatgggatctcattact
ccaactgaagatgggcagacacgagagctacaaaatcatctgggcctgtcagccccagta
cccaggggtcgaaaagggaagaaagtaaagactcaaacaagctcatttgatatacagaaa
gcagaatggcttcgaaaatataatcctgagcagctacttcaagatgaaggatacaaaaaa
catataaaacaccactgtaataaggttttgcttcgtgtaagaatgctgtattatctaaag
caagaagtcattggaaatgagtgtcagaaagtatttgatggagttgatgcaagtgacatt
gatgtttgggtcccagaaccagaccactcagaagttcctgctgaatggtgggattttgac
gctgataagtcccttcttattggagtttttaaacatggttatgaaaaatataacactatc
cgagcagacccagcattatgcttcttggaaagagtgggaaaacctgatgagaaagcagtt
gctgcagaacagagggcaaatgattatatggatggggatgtggaagatccagaatacaaa
cctgccccagctatctttaaagatgatatggaggatgatgtttcttcaccaggagatctt
gttatagcagatggagatggtcagctgatggagggtgataaaatttattggccaactcaa
tcagctttaaccacacgtttgaggcgtctcatcactgcatatcagcgtactaataaaaac
agacaaatccaacagatacagcccacgttctcagtgcctgccagtgtcatgcagcctctt
tatgaagaagccactcttaatcctaaaatggcagccaagatagaaagacagcagagatgg
acaagaagagaagaagctgacttttatagagttgtgtccacatttggagtggtatttgat
cctgacagaggccaatttgactggacaaaatttagagctatggctaggctgcataagaaa
actgatgatagtttggagaagtatttgtatgcattcatgtctatgtgtcggagggtttgt
cgtcttccttccaaagaagaattggtggatccaaatatttttatccagccaatcacagaa
gaacgtgcttcaaggactttgtatcgcattgaacttctaaggaaagtacgggaacaggcc
ctccgacatccacaattgtttgaacgcttgaagctttgccatccaaatccagacctacca
gtctggtgggaatgtggccctcatgatagggacttgctcattggagctgcgaaacatggg
gtgagccgaacagactatcacattcttcgtgatcctgaactctcctttatggcagctcaa
aggaactacagtcaaagtaagatggctccttcaaggacttctaccccacttttacagcaa
tatcaagtagcactttctgcttctcctcttacctctctacctaggctcctagatgctaaa
ggtattattctagaggatatgaaagttaaaagtgaaaatcttaaagaggagcctcagtct
tctgaagaagaatctatgtcttctgaggaaaccaggacactaataaagtctgagcctgta
agtccaaagaatggtgttttaccgcaggccactggagaccagaaatctggtggaaaaggt
gaaacagacagacgcatggttgcagccagaacagaacccctaactccaaacccagcttct
aagaaacagcgagtccacaaaagaggatccgaatctagttctgagtctgactctgattct
gagagatcatcctgttcttccagatcatcttcttcctcgtcttcctcctcctcttgttcc
gactctcgatcaggctctagttcctcttcatcctcctcctgttcttcagcatcgtcttca
tcctcatcctcatcctcttcctcatcatcctcctcctcatcttcatcagaagaaagtgac
agtgaagaagaagaagtcccaaagcgagcagaaggtacccctcacgtgaaagcctacgat
gaagaaagtgttgcgtcactgagcactacccaggatgagacccaagatagcttccagatg
aacaatgggacaccagagtccgcttatatcttacaaggaggatacatgctagcagcctca
tattggccaaaggatcgtgtgatgatcaaccggctggacagtatttgtcaaacagttctg
aaagggaagtggccttcagctagaagaagttatgatgccaacacagtggcctctttctat
accacaaaactgctggacagccctggcgcggctacagaatatagcgaacccagtgtaccc
acacccccaggcgccggtgttaaagaagaacacgatcagtcaacacagatgtcaaaggtg
aagaagcatgtacgagaaaaggagtttacagtgaaaatcaaagacgaaggtggtttgaag
ttgacatttcagaagcaagggcttgctcagaaaagaccgttcgacagcgaagacagtgcc
ctggggcagcaacagtaccttgctcggcttcgggaactgcagagtgcgtcggagaccagc
ctcgccacctttcccaaatctgtgccagtatcaggtacttccattcagtcatcccttggt
gccaatggagttagattagacaaccagcctatagtcaaaaaaaggcggggaaggaggaag
aacgtagaaggtgttgacatcctcttttttaacagaaataaaccacctaatcatgtgact
gtaggcctaaccagctcccagatttctacagggataaatccagcactgtcctacactcag
cctcaaggaattccggatacagaaagtccggttccggttattaacctgaaagatgggaca
agacttgcaggcgatgatgcgccaaagagaaaggatttggaaaaatggcttaaggagcac
ccaggttatgtggaagatttaggagcttttattcctagaatgcagctccatgaggggagg
cccaaacaaaagaggcatcggtgcagaaaccctaataaactcgatgttaatagtcttact
ggagaggaacgtgttcagctgattaacagaagaaatgccagaaaggttggaggtgcattt
gctccccctttaaaagatttatgtcgattcctgaaagaaaattcagaatatggtgtggct
cctgaatggggagatgttgttaagcagtctgggtttcttccagaaagtatgtatgagcgt
attctcactggtcctgttgtgagagaggaggtcagcaggcgggggcggcggcccaaaagt
ggaattgcgaaggccacggcagcggccacagctacaactgccagcggtgtttcaggcaat
cctttgtcggccaatggattacttccaggtgtggatctcacaactcttcaggccttacag
caaaacctacaaaacttgcagtcactgcaagtgactgcagggctgatgggaatgcctgct
ggcctttcttctggaggagaagctaaaaacgtggctgccatgttccccatgctgctgtca
ggaatgactggattaccaaatctgttgggcatgggagggctcctgacaaagcctaccgaa
tctggaacagaggaaaaaaagggaaatgaccctaaggagctagaaggaaaaaaagaaagg
acagagagtcaaaattcagagaatgggggagaaaactctgtgtcaagttctccttcgaca
tcgtctactgctgcattaaatacagctgcagctgccaacccgttagctcttaacccactc
ctactctccaatatactttatccagggatgcttctcactccaggccttaatcttcatatt
ccaactttgtcccagtccaatacttttgatgtacagaaaaacaaaaacagtgacttaggc
tcatctaagtccatagaagtcaaggaggaggattccagagttagagatcaggaagacaaa
ggaggaactgaacccagtcctctcaacgaaaacagcacagatgagggttcagagaaagcc
gatgcttcatctggatctgatagtacatcgtcatcatccgaggattcagattctagtaat
gaagactga
DBGET
integrated database retrieval system
