Lynx rufus (bobcat): 124511453
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Entry
124511453 CDS
T08475
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124511453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lruf03041
]
124511453
Enzymes [BR:
lruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124511453
Spliceosome [BR:
lruf03041
]
Complex C
Other components
Step II factors
124511453
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
PhoH
AAA_30
Flavi_DEAD
Microtub_bd
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
124511453
NCBI-ProteinID:
XP_046934645
LinkDB
All DBs
Position
Unknown
AA seq
1226 aa
AA seq
DB search
MEDTSEDASIHRLEGTDLDSQVGGLICKTKSAASEQHVFKAPAPRPSLLGLDLLASLKRR
EREEKDDGEDKKKSRISSYKDWEESKDDQRDAEEEDSDQAGRHSRKDRHYRSARVETPSH
PGGVSEEFWERSRQRERERREHGVYASSKEEKDRKKERSRDRDSDRKRDRDERDRSRHSS
RSERDGGSERSRRNEPESPRHRPKDAATPSRSTWEEEDSGCGSSRRSQWESPSPTPSYRD
SERSHRQSSRDRDRSVRSKYSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREDGE
EGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQKQK
RISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDSAAKVHLMVHNLVPPFLDGRI
VFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMGV
KKEEEPDKALTEDGKVDYRTEQKFADHMKKKSEASSEFAKKKSILEQRQYLPIFAVQQEL
LTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEM
GGSLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNT
DVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQE
DYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYSQ
LPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQ
IYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSL
GVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIV
SCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWKNN
NYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQA
AKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWL
AELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVRS
TKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaccagcgaggatgcctcgatccatcgattggaaggcactgatctggactct
caggttggtggtcttatttgtaagactaaaagtgcagccagtgaacagcatgtcttcaag
gcccctgccccccgcccttccttgctgggactggacttgttggcttccttgaaacgaagg
gagcgagaggagaaggacgatggagaggacaagaagaagtccagaatctcttcctacaag
gactgggaagagagcaaagatgaccagagagatgctgaggaggaagatagtgaccaagct
ggccgacatagccgaaaagacaggcattatcgatctgctcgggtagagactccatcccat
cctggtggtgtgagtgaagagttttgggaacgcagtcggcagagagagcgggagcggcgg
gaacatggcgtctatgcctcatccaaagaagaaaaggatcggaagaaagagagatcacgg
gatcgagactctgaccgcaagagagacagagatgagagggatagaagcagacacagcagc
agatctgagcgggatggagggtcagagcgcagcagaagaaatgaaccggagagcccgaga
caccgacctaaagatgcagctaccccttcaaggtctacctgggaggaagaggacagtggc
tgcggttcctcaaggcgctcgcagtgggaatcgccttccccgacaccttcctatcgagat
tctgagcggagccatcggcagtccagtcgagatcgcgataggtccgtgaggagcaagtat
tcagatgacacacctctgccaaccccatcctacaaatacaatgaatgggccgatgacagg
agacacctggggtccacaccccgtctgtccaggggccgaggaagacgggaggatggcgaa
gaaggaatttcatttgacacagaagaggaacggcagcagtgggaagatgaccagaggcaa
gctgaccgggactggtacatgatggatgagggatacgatgagttccacaaccccctggcc
tactcctccgaggactacgtgaggaggcgggagcagcacctgcataaacagaagcagaag
cgcatttccgctcagcggagacagatcaatgaggataacgagcgctgggagaccaaccgc
atgctcaccagtggagtggtccatcggctagaggtggatgaggactttgaggaggacagc
gcagccaaggtgcatctgatggtgcacaacctggttcctcccttccttgacggacgcatc
gtcttcaccaagcagccagagcctgtgattccagtcaaggatgctacttctgacctggcc
attattgcccggaaaggcagtcaaacagtgcggaagcacagggagcagaaggaacgcaaa
aaggctcaacacaaacactgggaactggctggaaccaagctgggagatataatgggtgtc
aaaaaagaggaagagcccgataaagcgctgacagaagacggtaaagtggactataggacg
gagcagaagtttgcagatcacatgaagaaaaagagtgaagctagcagcgaatttgccaaa
aagaagtcgattctggagcagaggcagtacctgcccatctttgctgtgcagcaggagcta
ctcactattatcagagataacagcatcgtgattgtggttggagaaacagggagcggtaag
accacccagctgacacagtacttgcatgaagacggttacacggactatgggatgattggg
tgcacccagcctcggcgtgtggctgccatgtcggtggccaagagagtcagtgaagaaatg
ggaggaagccttggtgaggaggtgggttatgccatccgctttgaagactgcacctcagaa
aacaccttgatcaaatacatgactgacgggatcctgctccgggagtccctccgggaagca
gacttggatcactatagtgccatcatcatggacgaggctcacgagcgctccctcaacact
gacgtgctctttgggctgctgcgggaggtggtggctaggcgctcagacctgaagctcatt
gtcacatcggctactatggatgcagagaaatttgctgcctttttcgggaatgttcccatc
ttccacatccctggtcgtaccttccctgttgacattctcttcagcaagacgccgcaggag
gattatgtggaggccgcggtgaagcagtccttacaggtgcacctgtcgggggcccccggg
gatatccttatcttcatgcctggccaagaggacattgaggtcacctcagaccagattgtg
gaacatctggaggaactagagaatgcacctgccttggctgtgctgcccatctactcccag
ctgccttctgatctccaggccaaaattttccagaaggctccagatggagttcggaagtgt
atcgttgccaccaacattgccgagacatctctgactgtcgatggcatcatgtttgttatt
gactctggttattgcaaattaaaggtcttcaaccccaggattggcatggatgctctacag
atctatcccatcagccaggccaatgccaaccagaggtcagggcgagccggcaggacgggc
ccaggtcagtgtttcaggctctacacccagagcgcctacaagaacgagctcctgacgacc
acggtgcctgagatccagaggactaacctggccaacgtggtgctgctgctgaagtccctc
ggggtgcaggacctgctgcagttccacttcatggacccgccccccgaggacaacatgctc
aactccatgtatcagctctggatccttggggccctggacaacacaggtgggctgacctcg
actgggcggctgatggtagagttcccgctggacccggccctgtccaagatgctcatcgtg
tcctgtgacatgggctgcagctccgagatcctgctcattgtgtccatgctctcggtgcca
gccatcttctacaggcccaagggccgagaggaggagagtgatcaaatccgggagaagttt
gctgtccccgagagtgatcatttgacctacctgaatgtctacctgcagtggaagaataat
aattactccaccatctggtgtaacgatcatttcatccatgccaaggccatgcggaaggtc
cgggaggtgcgggctcagctcaaggacatcatggtacagcagcggatgagcctggcctcg
tgtggcactgactgggacatcgtcaggaagtgtatctgtgctgcctatttccaccaggca
gccaagctcaagggaattggggagtatgtgaatatccggacagggatgccctgccacttg
caccccaccagctccctctttggaatgggctacaccccagactacatagtgtatcacgag
ctggtcatgaccaccaaggagtacatgcagtgtgtcactgctgtggatggagagtggctg
gcggagctgggccccatgttctacagcgtcaaacaggcgggaaagtctcggcaggagaac
cgccgacgggccaaagaggaagcctctgccatggaggaggagatggcactggctgaggag
cagctgcgagcccgccggcaggagcaagaaaagcgcagccctctgggcagtgtcaggtct
acaaaaatctacactccaggtcggaaggagcaaggggaacccatgacccctcgccgcacg
ccagcccgctttgggctctga
DBGET
integrated database retrieval system
