Lynx rufus (bobcat): 124512564
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Entry
124512564 CDS
T08475
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124512564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lruf03019
]
124512564
Messenger RNA biogenesis [BR:
lruf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124512564
U7-dependent histone pre-mRNA processing factors
124512564
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
124512564
NCBI-ProteinID:
XP_046936153
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL
SHPDPLHLGALPSAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT
PGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDS
EMQVDAPSDSSVLAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacatctattatcaaattgactaccctctcgggggttcaggaagagtctgctctttgc
tatcttctgcaagttgacgagtttaggtttctcctggactgtggctgggatgagcacttt
tctatggatattatagactccctgaggaagcatgttcaccagattgatgcagtgctgttg
tcccatcctgatcctctccatcttggtgccctcccgtctgctgtcgggaagctggggctg
aattgtgcgatctatgcgaccattcctgtttataaaatgggacagatgttcatgtatgat
ctttaccagtctcgacacaacacagaggactttacgctctttacattagacgatgtggat
gcagcctttgataaaatacagcagttaaaattctctcagattgtgaatttgaaaggtaaa
ggacatggcttgtctatcacacctctgccagctggtcatatgataggtggaacaatatgg
aaaatagtcaaagatggagaagaagaaattgtctatgcagttgactttaaccacaagagg
gagatccatttaaatggatgttccctggaaatgctaagcagaccctccctgcttatcaca
gattcatttaatgctacgtatgtgcagcctcggaggaaacagagagacgaacagcttctg
acaaatgtcctggaaacgcttcgaggtgatggaaatgtgttaatagcagtggacactgca
ggcagagttttggaacttgctcaactccttgatcagatctggagaactaaagatgcaggg
ctaggtgtctactcactggcactcctgaataatgtcagctacaatgtggtggagttttct
aagtcccaggtagaatggatgagtgacaaattgatgagatgttttgaagacaaaagaaat
aatccatttcagttccgccacctctctctgtgccacggtctttctgacctggcccgggta
ccgagccctaaagtggtgcttgccagccagcccgacctggaatgtggattttcaagggat
ctctttattcagtggtgtcaggaccctaaaaactcaatcattctaacctacagaactact
cctgggactttagcacgtttcctaattgataatccttccgaaaaaattacagaaatagag
ttaaggaagcgtgtgaagcttgaagggaaagaacttgaagaatacttggaaaaagagaaa
ctaaagaaagaagctgcgaaaaaacttgagcagtcaaaagaggcagacatagattctagt
gatgagagtgacgttgaggaagatattgaccagccctcagctcataaaaccaagcatgac
ctgatgatgaaaggtgaaggtagtcgtaaaggaagtttcttcaaacaggctaaaaagtct
tatcctatgtttcctgccccagaagaaagaattaaatgggatgaatatggagaaattatc
aaaccagaggatttcttagtgccagaacttcaagcaactgaagaagagaaaagcaaattg
gaatctggcttgacaaatggagatgaacccatggatcaggatctatctgatgttcccact
aagtgtatttctacaacagagtctattgaaataaaagctagggttacttacatagactat
gaaggacgctctgatggagattccattaaaaagatcattaatcagatgaaaccacgacag
ttgatcattgtccacggaccaccagaggccagtcaagatcttgccgagtgctgccgtgca
tttggtgggaaagatattaaggtgtacatgccaaagctacacgaaacagttgatgccact
agtgaaactcacatctaccaggtgagattgaaagactcacttgtcagctcccttcagttt
tgtaaggcaaaagatgctgaattagcttggatagatggagtcttagacatgagagtttcc
aaagtggacacaggagttatcttagaagaaggagaactgaaggatgatggagaagactcg
gaaatgcaggtggacgctccttcggactccagtgttctggcacaacagaaggccatgaag
agcctgtttggggatgatgaaaaagaaacgggtgaagaaagtgagatcattccgactttg
gagcccttacccccccatgaggttcctggacaccagtcagtttttatgaacgaaccaaga
ctgtcagacttcaaacaagttcttttacgggaggggattcaagctgaatttgtagggggc
gtacttgtttgcaacaatcaagtagcagtccgcaggacggaaactggccgcattggatta
gaaggctgcctttgtcaagatttttataggataagagaccttttatatgaacagtatgcc
attgtgtaa
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