Lynx rufus (bobcat): 124512997
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Entry
124512997 CDS
T08475
Name
(RefSeq) sodium-dependent serotonin transporter
KO
K05037
solute carrier family 6 (neurotransmitter transporter, serotonin) member 4
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf04082
Neuroactive ligand signaling
lruf04721
Synaptic vesicle cycle
lruf04726
Serotonergic synapse
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
124512997
09150 Organismal Systems
09156 Nervous system
04726 Serotonergic synapse
124512997
04721 Synaptic vesicle cycle
124512997
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lruf02000
]
124512997
Transporters [BR:
lruf02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
124512997
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SSDB
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GFIT
Motif
Pfam:
SNF
5HT_transport_N
DUF8005
Motif
Other DBs
NCBI-GeneID:
124512997
NCBI-ProteinID:
XP_046936635
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All DBs
Position
Unknown
AA seq
630 aa
AA seq
DB search
MDTTPLNSQKELSACKDKDDCQENGVLQKGVPVPEDKVESGQISNGYSAVPSPGAEDDTQ
HSIPAATTSLVAEAHRGERETWGKKMDFLLSVIGYAVDLGNVWRFPYICYQNGGGAFLLP
YTIMAVFGGIPLFYMELALGQYHRNGCISIWRKICPIFKGIGYAICIIAFYIASYYNTIM
AWALYYLISSFTDQLPWTSCKNSWNTGNCTNYFSEDNVTWTLHSTSPAEEFYTRHILQIH
RSKGLQDLGGISWQLAVCIMLIFTVIYFSIWKGVKTSGKVVWVTATFPYIILSVLLVRGA
TLPGAWRGILFYLKPNWQKLLETGVWVDAAAQIFFSLGPGFGVLLAFASYNKFNNNCYQD
ALVTSGVNCMTSFVSGFVIFTVLGYMAEMRNEEVSEVAKDAGPSLLFITYAEAIANMPAS
TFFAIIFFLMLITLGLDSTFAGLEGVITAVIDEFPHIWSERREWFVLGVVITCFFGSLVT
LTFGGAYVVKLLEEYATGPAVLTVVLIEAVAVYWFYGITQFCSDVKEMLGFSPGWFWKIC
WVAISPLFLLFIICSFLMSPPQLRLFQYNYPQWSIILGYCIGTSSFICIPTYITYRLIIT
PGTFKERIIKGITPETPTEIPYGDVHLNAI
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggataccacgcccttaaattcccagaaagagctgtcagcctgtaaggataaagacgat
tgtcaggaaaatggagttctacagaagggtgtgcctgtccccgaggataaggtggagtct
ggccaaatctccaatgggtactcagcagttccaagccctggtgcagaagatgacactcag
cactccattccggctgccaccacctccctagtggctgaggctcatcgaggggaacgggag
acctggggcaagaagatggatttcctcctctcagtcattggctatgctgtggacctgggc
aacgtctggcgctttccttacatatgttaccagaatggagggggagcgttcctcctaccc
tacaccatcatggctgtttttggggggatcccgctcttctacatggagctcgcattaggc
caataccaccgaaatggatgcatttcgatatggaggaaaatctgcccaattttcaaaggg
atcgggtatgccatctgcatcattgccttctacatcgcttcctactacaacaccatcatg
gcctgggcgctctactacctcatctcctccttcacggaccagctgccctggaccagctgc
aagaactcctggaacactggcaactgcaccaactacttctccgaggacaacgtcacctgg
acgctccactcaacgtcccctgcagaagaattttacacgcgccacatcctgcagatccac
cggtctaagggacttcaggacctggggggcatcagctggcagctcgctgtctgcatcatg
ctgatcttcactgtgatctacttcagcatctggaaaggtgtcaaaacgtctggcaaggtg
gtgtgggtgacagccaccttcccttacatcatcctttcagtcctgctggtaagaggtgcc
accctccccggagcctggaggggtattctcttctacttgaaacccaactggcagaaactt
ctggagacaggggtgtgggtggatgctgccgcacagatcttcttctctcttggtcctggc
tttggggtcttactggctttcgctagctacaacaaattcaacaacaactgttaccaagac
gccctggtgaccagtggggtgaactgcatgacgagcttcgtttccggatttgtcatcttc
acggtgctcgggtatatggcagagatgaggaatgaagaggtgtctgaggtggctaaagat
gcaggccccagcctcctcttcatcacatatgcagaagccatagccaacatgccagcgtcc
acattctttgccatcatcttcttcctgatgctaatcacactgggcctggacagcaccttt
gcaggcttggagggggtgatcacagctgtgatagacgagtttccgcacatctggtccgag
cgccgagagtggtttgtgcttggtgtggtcattacctgcttcttcggatccctggtcacc
ctgacttttggaggggcgtacgtggtaaagctgctggaggaatatgccacaggccctgca
gtgctcaccgttgtacttatagaagcagttgctgtctattggttttacggcatcactcag
ttctgcagtgatgtgaaagaaatgcttggcttcagccctggatggttttggaagatctgc
tgggtagccatcagccctctgtttctcctgttcatcatttgcagttttttgatgagccca
ccacagctacgacttttccaatataattatcctcagtggagtatcatcctgggttactgc
ataggaacctcgtcttttatctgcatccccacatatataacgtatcggctgatcatcact
ccagggacatttaaagagcgtatcattaaaggtatcactcccgaaacaccaacagaaatt
ccctatggggacgtccacttgaacgccatataa
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