KEGG   Lynx rufus (bobcat): 124513076
Entry
124513076         CDS       T08475                                 
Name
(RefSeq) DNA ligase 3 isoform X1
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
lruf  Lynx rufus (bobcat)
Pathway
lruf03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:lruf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    124513076
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lruf03400]
    124513076
Enzymes [BR:lruf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     124513076
DNA repair and recombination proteins [BR:lruf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     124513076
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase Synaptonemal_3 mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 124513076
NCBI-ProteinID: XP_046936770
LinkDB
Position
Unknown
AA seq 1007 aa
MPLDESAHFVCMTLTFKILFLPTLRALGRKELCLFGEQHCWPDRRQFGHWSETELFHGHG
LLQRRKAVLSSQKGGLRPRATRLVFLPGSHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKC
KEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEE
LEDNEKEQISQHIADLSSKATSTPKKKAVVQAKLTATGQVTSPVKGASFVTNTNPRKFSG
FAAKPNNSGEARSSPTPKSSLSSSRCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQD
FLRKGSAGDGFHGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQG
DVSETIRVFFEQSKSFPPAAKSLLTIQEVDAFLLRLSKLTKEDEQQQALQDIASRCTAND
LKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGRR
RALSVQASLMTPVQPMLAEACKSIEHAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSR
SLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDTKTGKPLPFGTLGVHKKAAFQDA
NVCLFVFDCIYFNDISLMDRPLCERRKFLHDNMVEIPNRIMFSEMKQVTKASDLADMINR
VIREGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMM
SIFLMGCYDPGSQKWCTVTKCSGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYY
PDFIVPDPKKAAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATDLPKLKEL
YQLSKERADFTVAAGDEGSSTTGGSSGENEVTSRPASRASPKQPSTSAKKAGGRRSSPNS
RGGSKPTAKPPPVRVGEKRKAPDEPPGQAKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAF
DGDLVQEFDMASATHVLGSRDENPEAQQVSPEWIWACIRKRRLVAPC
NT seq 3024 nt   +upstreamnt  +downstreamnt
atgccccttgatgaatctgcgcattttgtctgtatgactttgactttcaagatcctcttc
ctcccaaccctccgcgcactcgggcgaaaagaactctgcctcttcggagaacaacattgc
tggcctgacagaagacagttcggccattggtcagaaacagagctgtttcatgggcacggc
ctcctccagagaagaaaggccgttctgtcatcccagaaaggcggtctaagaccacgtgcc
acccgccttgttttcttgccagggtcgcatgtgggactctgcagtggcccctgtgagatg
gccgagcaacggttctgtgtggactacgccaagcgtggcacggccggctgcaaaaagtgc
aaggaaaagatcgtgaagggcgtatgccggatcggcaaagtggtgcccaaccccttctca
gagtccgggggcgatatgaaagagtggtatcacattaaatgcatgtttgagaaactggag
cgggcccgggccaccacaaaaaaaattgaggacctcaccgagctggaaggctgggaagag
ctggaagataatgagaaggaacagataagccagcacattgcagatttgtcttccaaggca
acaagcacaccaaagaagaaagctgttgtccaggctaagctgacagccactggccaggtg
acgtctccagtgaaaggtgcctcatttgtcaccaataccaatcctcggaaattttctggt
tttgcagccaagcccaacaactctggggaagcccgctcaagccctacccctaagtcaagc
ctgtcctcaagcagatgtgaccccaagcacaaggattgtctgctacgtgagtttcggaag
ttgtgtgccatggtggctgaaaatcctagctacaacacgaagacccagatcatacaggac
ttccttcggaaaggttcagcaggagatggtttccacggtgacgtgtacctaacagtgaag
ctgctgctgccaggtgttattaagagtgtttacaacttgaacgataagcagattgtgaag
cttttcagccgcatttttaactgcaacccagatgatatggcacgagacctagagcagggt
gacgtgtcagagacgatcagagtcttctttgagcagagcaagtctttccctccagctgcc
aagagcctcctcaccatccaagaggtagatgcgttcctccttcgcctctccaagctcacc
aaggaggatgagcaacagcaggccctgcaggacatcgcgtccaggtgtacagccaacgac
cttaagtgcatcatcagattgatcaaacatgacctgaagatgaactcaggtgcaaaacac
gtgttagatgcccttgaccccaatgcctatgaagccttcaaagcctcacgcaacctgcag
gacgtggtggagcgagtcctccgcaatgagcaggaggtggagaaggagccaggccggaga
cgagctctgagtgtccaggcttcactgatgacgccagtgcagcccatgctggccgaggcc
tgcaagtccatcgaacatgcgatgaagaagtgtcctaatggcatgttctctgagatcaag
tatgacggggagcgagtccaggtgcataagaacggagaccacttcagctacttcagccgc
agcctcaagcccgtcctgcctcacaaggtggcccactttaaggactatatcccccaggct
ttccctgggggccacagcatgatcttggactctgaggtgctcctgatcgacactaagaca
ggcaaaccgttgccctttgggactcttggggtgcacaagaaagctgccttccaggatgct
aacgtctgcctgtttgtttttgattgtatctacttcaatgacatcagcttgatggacagg
cctctgtgtgagcggcggaagtttcttcatgataacatggttgaaattcccaaccggatc
atgttctcagaaatgaagcaagtcactaaagcttcggacttggccgacatgataaaccgg
gtcatccgagaggggttggaagggctggtgctgaaggacgtgaagggtacatatgagcct
ggaaagcggcactggctgaaagtcaagaaagactatttgaatgagggggccatggctgac
acagctgacctggtggtccttggggccttctatgggcaagggagcaaaggtggcatgatg
tccatcttcctcatgggctgctatgacccaggcagccagaagtggtgcacggtcaccaag
tgttcgggaggccatgatgatgcgacgcttgcccgcctgcagaaggaactggacatggtg
aagatcagtaaggatcccagcaagatacccagctggctgaaaatcaacaagatctactac
ccggacttcatagttccagacccaaagaaagctgccgtgtgggagatcacaggggccgag
ttctccaaatctgaggctcacacggccgacggaatctccatccgattccctcgttgcacc
cggatccgtgatgataaggactggaaatctgccactgacctccccaaactcaaggaactg
taccagctgtccaaggagagggcagacttcactgtggcagccggagatgaggggagctcc
actactgggggtagcagcggagagaacgaggttacctcgcggcctgcctccagggcctcc
ccgaagcagccctccaccagtgccaagaaggcaggagggaggcggagcagccccaacagc
cgaggtggtagcaagcccacagcgaagcctccccccgtgagagtgggagagaagcggaag
gctcctgacgagcccccgggccaagcaaaggtgctgctggacatcttcactggggtgcgg
ctctacctgccaccctccacgccggacttcagccgtctcagacgctactttgtggcattc
gatggggacctggtgcaggaatttgacatggcttcggccacgcacgtgctggggagcagg
gacgagaaccctgaggcccagcaggtctccccggagtggatctgggcgtgtatccggaaa
cggaggctggtagctccctgctag

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