Lynx rufus (bobcat): 124513501
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Entry
124513501 CDS
T08475
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
lruf
Lynx rufus (bobcat)
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lruf03019
]
124513501
Messenger RNA biogenesis [BR:
lruf03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
124513501
3'-5' decay
Other 3'-5' decay factors
124513501
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
UvrD-helicase
AAA_30
ResIII
PhoH
PAM2
zf_CCCH_4
Mov-10_helical
zf-CCCH_4
AAA_22
AAA_16
AAA_7
Bac_DnaA
Mg_chelatase
AAA_5
Motif
Other DBs
NCBI-GeneID:
124513501
NCBI-ProteinID:
XP_046937508
LinkDB
All DBs
Position
Unknown
AA seq
1938 aa
AA seq
DB search
MEDRRAEKSCEQACESLKRQDYEMTLKHCTEALLSLGQYSMADFTGPCPLEIESIKIESL
LYRIASFLQLKNYGQADEDCRHVLGEGLATGDGAFQAVLCCMQLKGKLQPVSNILAKSLT
GESLNGMVTKDLTRLKTLLTETETATSNVLSGYHVEGLEGGSCNGWHFRPPPRGITSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELAEWQKRYASRLIKLKQQNENKQLSGSYMETLI
EKWMNSLSPEKVLSECIEGVKVEHNPDLSVTVNTKKSHQTWTFALTCKPARMLCRVALLY
DAHRPHFSIIAISAGDSTTQVSQEVPENCQEWIGGKMAQNGLDHYVYKVGIAFNTEIFGT
FRQTIVFDFGLEPVLMQRVMIDAASTEDLEYLMHAKQQLVTTAKRWDSSSKTIIDFEPNE
TTDLEKSLLIRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSKFNL
KVQLQILASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVP
KEKLVQTQGTKEKVYEATIEEKTKEYIFLRISRECCEELNLRPDYDTQVELQFQLNRLPL
CEMHYALDRIKDNGVLFPDITMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQ
LPPVLIIGPYGTGKTFTLAQAVKHILQQQETSRILICTHSNSAADLYIKDYLHPYVEAGN
PQARPLRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQYLC
QLDLEPGFFTHILLDEAAQAMECETIMPLALAAKNTRIVLAGDHMQLSPFVYSEFARERN
LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYP
LTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ
VFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDS
TEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENNSLHG
ITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRLQHSGNTNKLQQSPPKGKSLHHAQND
HFQNDGIVQPNPSVLIGNPIRAYTPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVY
GGNVVMSVPLPVPWTGYQGRFAVDPRILTHQAAMAYNMNLLQTHGRGSPLPYGLGHHPPV
SIGQPQSQHQEKDQHEPSRNGKSDTNNPGPEISKIRTPEKKPMESKQIDLESNPQNRSPE
SRPGVVYPNTKFHRKDNLNPRHINLPLPAPHAQYAIPNRHFHPLPQLPRPPFPIPQQHAL
LNQQQNNLPEQPNQLPPQPNQVVPPQNPLNQLTQQPPPQLSPAYQAGPNSAFFNSAVSHR
PQSPPAEAVIPEQQPPPMLQEGHSPLRAIAQPGPLLPSHLNNFTDETPPGLPIGEALDRM
HGSVALETLRQQQVRLQQWNEHHAYLSQGSIPYPHHHPHPHLQHLPQPPVRADWKLPSGA
EDEAETADSRFQDLIRELSNRDQSETRELAEMPPPQSRLLQYRQVQSRSPPAAPPPPSST
DHSGHFSNFNDSSRDIEVANNPAFPQRLPPQLFSSPFSLPSEHLAPPPLKYLAPDGAWTF
ANLQQSHLMGPGFPYGLPPLPHRPPQNPFVQIQNHQHAIGQEPFHPLSSRTVSSSSLPSL
EEYEPRGPGRPLYQRRISSSSVQPCSEEVSTPQDSLAQYKELQDHSSQSSFNFSSPESWV
NTTSSTPYQNIPCNGPSRTAQPRELIVPPPKTVRPPEDQLKSESLEASSSFNYNVLQHLG
QFPPLMPNKQIAESASSGSQQSSGGSKPAMSYASALRAPPKPRPQPEQAKKSSDPLSLFQ
ELSLGSSSGSNGFYSYFK
NT seq
5817 nt
NT seq
+upstream
nt +downstream
nt
atggaagacagaagagctgagaagtcatgtgaacaagcgtgcgaatcacttaagaggcag
gactatgaaatgaccctcaagcactgcacagaggccctcctttctcttggccagtactcc
atggccgacttcacagggccatgtccactggagatagaaagcatcaaaattgagagtctt
ctttacagaatcgcctcgtttttgcaactgaaaaactatgggcaagctgatgaagattgt
aggcatgtgctgggggaaggcctggccacgggagatggtgccttccaggcagtgctttgc
tgcatgcagctgaaaggaaagctccagcctgtatccaacattcttgccaagtcgctgaca
ggagagtccctgaatgggatggtaacaaaagatttgacaagactgaaaacacttctcaca
gaaacagagacagcaactagtaacgtcctgtctggatatcacgtggaaggcttggaaggg
ggatcttgtaatggttggcatttccgcccaccacctaggggaatcacaagcagcgaggaa
tatactttgtgtaaaagatttttagaacaaggcatctgtaggtacggtgcccagtgtact
tcagcgcactcccaggaagaactagcagaatggcagaaacgatacgcctcgcggctgata
aaattgaaacagcaaaacgagaataaacagctctcaggcagttacatggagaccttgata
gaaaagtggatgaattcattatctcctgagaaagtgcttagcgaatgtatagagggagta
aaagttgagcataatcctgatctgtcggttactgtcaacaccaaaaagtctcaccagaca
tggacctttgctcttacttgtaagcctgcaagaatgctgtgtcgggtagcgttgctctat
gatgcacatcgtcctcattttagtatcattgcaatatctgccggagatagtactacccag
gtatcgcaggaagtcccagagaactgtcaagaatggataggaggaaagatggcccaaaat
ggattagatcattacgtgtataaagtcgggatagcatttaacacagaaatctttggaact
tttcgccaaaccatagttttcgactttggattggaaccagtactcatgcaaagagtaatg
attgatgcggcttctacagaagatcttgaatacctgatgcatgcaaaacaacagctagta
accacagctaagcgttgggattcttcttctaagactattatagattttgaacctaatgaa
actactgatttggagaagagccttcttatcagataccaaattcctctctctgctgaccag
ctgtttacccagtcggttttagacaaatcattgaccaagaccaactatcagtcacggctg
catgaccttctttatattgaggagatagcccagtataaagaagtcagcaagttcaacctt
aaagtgcaattgcagattttagcaagcttcatgctcacgggagtttctggaggcgcaaag
tatgctcagaatggacaactttttggtcgctttaagcttactgaaacactttctgaagat
actttggctggacggctggtgatgaccaaagtcaatgctgtttatttattaccagtccct
aaagagaagttagtacagacccagggaaccaaagagaaggtttatgaagctactattgaa
gagaaaacaaaagaatatatatttttaaggatatccagggaatgctgtgaagaacttaat
cttcggcctgattatgacacacaggttgaacttcagtttcaattaaatcgattacccctc
tgtgaaatgcattatgcgctagacaggatcaaggacaatggggttttgtttccagacatc
actatgactccaaccataccttggagtcccaacagacagtgggacgaacaattggatcct
cggctgaatgcaaaacagaaagaggctgttctggccatcacaactcctctttcaatccag
ctgcctcccgtcctcatcatcggaccctatgggacaggcaaaacgttcactctagctcag
gccgtcaagcacatactccagcagcaggagacgagcaggattctcatttgcacccattct
aatagtgctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaat
ccccaggcaagacctctcagggtatatttcagaaatcgctgggttaagactgtccaccca
gttgtgcatcagtactgtttgatctcaagcgcacattccacctttcagatgccacagaag
gaggatattcttaaacaccgagtggtggttgttacattgaatacttcccagtacctctgt
cagttggaccttgaacctgggttttttacacacattctgttagatgaagccgcccaggcc
atggagtgtgaaaccattatgcctctagcgttagcagctaaaaatacgcggattgtcttg
gctggtgaccacatgcagctcagtccttttgtttacagcgagtttgccagggagagaaac
cttcatgtgtcattacttgatcgactctatgagcattaccctgccgagtttccgtgtagg
atcctcctgtgtgagaattaccgctcccatgaagctatcatcaattacacctctgagctc
ttctatgagggcaaactgatggccagtggaaagcaaccagcacacaaggatttctaccca
ctaactttctttacagcacgaggggaagatgtacaagaaaaaaatagcacagctttttat
aataatgcagaggtcttcgaagtggtggaacgtgtggaagagttgagacggaagtggccg
gtagcatgggggaagttggatgatggcagtattggcgtggtgactccgtacgctgatcaa
gtgtttaggatacgtgctgaacttcggaaaaagagattatctgatgttaatgtagaaagg
gtgctaaatgttcaaggaaagcagttcagagttttgtttcttagcacagtacgtacaagg
catacttgtaaacacaaacagacaccaattaaaaagaaagagcaactgctggaagattcc
acagaggatttagattatggttttttatctaactacaagcttctcaatactgccatcaca
agagcacaatctctggttgctgtggtgggtgatcccatcgccctgtgctctatcggaaga
tgcaggaaattttgggagcggtttattgccctgtgtcatgaaaataatagcctacacgga
atcacttttgaacagatcaaagctcagctagaggctttagaactaaagaagacgtatgtg
ttgaatccactggcacctgaatttatcccccgggctctaagactgcagcattcaggaaat
accaacaaactgcagcagtcaccccccaaggggaaaagcctccatcatgcccagaatgat
catttccagaatgatggaattgttcagcccaatccttctgtacttattggcaatcctatt
agagcatatactcctccacccccccttggacctcacccaaatttggggaaatccccaagc
cctgttcaaagaatagatcctcacactgggacaagtattctttatgtacctgctgtctat
ggagggaatgtagttatgtcggtgcctttacctgtaccatggacagggtaccagggcagg
tttgcagttgatcctcggatccttacacaccaagcagcgatggcctacaatatgaacctc
ttacagacacacggacgggggtctcccctaccgtatggccttgggcaccacccacccgtc
agcatagggcagccacaaagccagcatcaggagaaggatcaacatgagccaagtcgaaat
ggtaaaagtgatacaaataatcctggacctgaaattagtaagattcgaacaccagagaaa
aagcctatggaatccaaacagattgatttggaatcaaatccacagaacagaagtcctgag
tcgcgtcctggtgttgtttatcccaataccaaatttcatcgcaaagataatctcaacccg
agacatataaatcttcctctccctgctccccacgcacagtatgcaatccccaatcgtcat
tttcatccccttccccagctacccagaccaccatttccaattccgcagcagcacgccttg
ttaaatcagcagcagaataatttgcctgaacaaccaaatcagttgccgccccaaccaaat
caggtagtcccgccacagaatccgttgaatcagctgactcagcagccacctcctcaactt
tcccctgcctatcaggcagggcccaacagcgctttctttaatagtgcggtctctcaccgg
ccccagtcccctcctgcagaggctgtgattcctgagcagcagccccctcccatgctgcag
gaaggccacagccctcttcgggccatcgcccagcccggccccctccttccttcccatctg
aataacttcactgatgagactcccccgggattgccaatcggggaggctttagatcgtatg
catgggagtgtagctctggaaacactgaggcagcagcaggtgcggctccagcagtggaat
gagcatcacgcctatctcagtcagggcagtattccgtaccctcaccaccatccacatcct
cacctccagcatcttcctcagccgccagtgagagcagactggaagctccctagcggcgcg
gaggacgaagcagaaaccgcagactccaggtttcaagacttaatcagagaactgtctaat
cgtgatcaaagtgaaacacgggaactggctgaaatgccaccacctcaatcaagacttttg
caatatagacaagttcagagcaggagcccgccagcagccccgcctcccccgtccagcacg
gaccacagtggccacttttctaactttaatgacagtagcagagacatcgaagtagccaac
aacccagcatttccgcagcgcctgccgccccagctcttcagctcaccgttctcattgcca
tccgaacaccttgcccctcctcccttgaaatacctggcgcctgacggagcgtggactttt
gctaacttacaacagagtcacctaatggggccgggttttccctacggcctacctcccttg
cctcacagaccaccgcagaacccttttgtacaaatacagaatcatcaacacgctattggt
caagagccatttcacccactgtcatctcgaacagtatcttcttcttcgctccctagctta
gaagagtatgaacccagaggacctggtcggcccttgtaccaaagaagaatctcatctagc
tcagtccagccttgttctgaagaagtaagcactcctcaagacagtcttgctcagtataaa
gagcttcaggaccatagtagccaatcttctttcaacttttcatccccggagtcctgggta
aacaccacctcatctaccccctatcagaacattccgtgtaatggacccagcaggacagct
caacccagagagttgatagttccaccacccaagaccgtcagaccccctgaggatcagctg
aagtccgagagcctcgaggcgtccagttccttcaactataatgtgctgcagcatctcggc
cagttccccccactcatgcccaacaagcagatcgcggagtcggccagcagcggtagccag
cagagctcggggggcagcaagcccgccatgtcctacgccagcgctttgcgggcccctccc
aagcccaggccccagcctgagcaggccaagaagagtagcgaccctctgtctctgttccag
gaactcagcctggggagctcatcaggcagcaatggcttttactcctattttaaataa
DBGET
integrated database retrieval system
