Lynx rufus (bobcat): 124513895
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Entry
124513895 CDS
T08475
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf04151
PI3K-Akt signaling pathway
lruf04382
Cornified envelope formation
lruf04510
Focal adhesion
lruf04512
ECM-receptor interaction
lruf04820
Cytoskeleton in muscle cells
lruf04926
Relaxin signaling pathway
lruf04933
AGE-RAGE signaling pathway in diabetic complications
lruf04974
Protein digestion and absorption
lruf05146
Amoebiasis
lruf05165
Human papillomavirus infection
lruf05200
Pathways in cancer
lruf05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
124513895
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124513895
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124513895
09142 Cell motility
04820 Cytoskeleton in muscle cells
124513895
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
124513895
09154 Digestive system
04974 Protein digestion and absorption
124513895
09158 Development and regeneration
04382 Cornified envelope formation
124513895
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
124513895
09162 Cancer: specific types
05222 Small cell lung cancer
124513895
09172 Infectious disease: viral
05165 Human papillomavirus infection
124513895
09174 Infectious disease: parasitic
05146 Amoebiasis
124513895
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
124513895
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lruf04147
]
124513895
00536 Glycosaminoglycan binding proteins [BR:
lruf00536
]
124513895
Exosome [BR:
lruf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124513895
Glycosaminoglycan binding proteins [BR:
lruf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124513895
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
124513895
NCBI-ProteinID:
XP_046937857
LinkDB
All DBs
Position
Unknown
AA seq
1685 aa
AA seq
DB search
MQLRGISLAAGLFLLALSLWGQPAEAAACYGCSPGSKCDCSGVKGEKGERGFPGLEGHPG
LPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQG
IPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPG
IQGPAGPTGLPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGP
PGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGVKGEKGEQGEPGKRGKP
GKDGENGQPGIPGLPGDPGSPGEPGRDGEKGQKGDIGPTGPPGLVIPRPGTGVTVGEKGS
IGLPGLPGEKGERGFPGIQGPPGLPGPPGTAVMGPPGPPGFPGERGQKGDEGPPGLSIPG
SPGLDGQPGAPGLPGPPGPPGPQIPPSDEICEAGPPGPPGSPGDRGLQGEQGVKGDKGDT
CFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGHAGPTGPKGLTGIPGAPGPPGF
PGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGIAFKG
ERGPPGNPGLPGLPGNRGPMGPVGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTIT
QPGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGI
PGPPGAPGTPGRIGLEGPSGPPGFPGPKGEPGLGLPGPPGPPGLPGFKGTLGPKGDRGFP
GPPGPPGRAGLDGLPGPKGDIGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPVGQPGLHG
IPGEKGDPGPPGFDVLGPPGERGSPGIPGAPGPMGPPGSPGIPGKAGASGFPGAKGEMGM
MGPPGPPGPLGIPGRSGVPGLKGDNGLQGQPGPPGPVGEKGGKGEPGLPGPPGPMDPDLL
GSKGEKGDPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPSGPKGNPGLPGKPGLT
GPPGLKGSIGDMGFPGPQGVKGSPGPPGVPGQPGSPGLPGQKGEKGDPGISGIGLPGLPG
PKGEPGLPGYPGNPGIKGSMGDTGLPGLPGTPGAKGHPGLPGFPGTPGLPGPKGISGPPG
NPGLPGEPGPVGGGGRPGPPGPPGEKGSPGQDGIPGPAGQKGEPGQPGFGIPGPPGLPGL
SGQKGDGGLPGIPGNPGLPGPKGEPGFQGFPGVQGPPGPPGSPGPALEGPKGDPGPQGPP
GRPGLPGPEGPRGLPGNGGIKGERGNPGQPGQPGLPGLKGDQGPPGLQGNPGRPGLNGMK
GDPGLPGVPGFPGMKGPSGIPGSTGPEGDPGLVGPPGPPGLPGPSGQSIIIKGDVGPPGI
PGQPGLKGLPGLPGPQGLPGPIGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP
PGPDGLQGPPGPPGTSSIAHGFLITRHSQTTDAPQCPHGTVQIYEGFSLLYVQGNKRAHG
QDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPLKGRSIQPF
ISRCAVCEAPAMVIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGAEGSGQALASPGSC
LEEFRSAPFIECHGRGTCNYYANSYSFWLATVDMSDMFSKPQSETLKAGDLRTRISRCQV
CMKRT
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgcgtggaatcagcctggctgccggcttgttcttactggccctcagtctttgg
gggcagcctgcagaggctgcggcttgctatgggtgttctccaggatcaaaatgtgactgt
agtggtgtaaaaggagaaaagggggagagagggtttccaggtttggaaggccatccaggt
ttgcctggatttccaggtccagaagggcctccagggcctcggggacaaaagggtgatgat
ggaattccagggccaccaggaccaaaagggatcagaggtcctcctggacttcctggattt
ccagggacaccaggtcttcctggaatgccaggccacgatggagctccaggacctcaaggt
atcccaggatgcaatggaaccaagggagaacgtggatttccaggcagtcccggttttcct
ggtttacagggtcctccaggacctcctgggatcccaggtatgaagggagaaccaggtagt
ataattatgtcatcgctgccaggaccaaagggtaatccaggatatccaggtcctcctgga
atacaaggcccagctggtcccactggtttaccagggccaattggtcccccaggaccacca
ggtttgatgggccctcctggtccaccaggacttccaggaccaaaggggaatatgggctta
aatttccaaggacccaagggtgaaaagggtgagcaaggccttcagggcccccctgggcca
cctggacagatcagtgaacagaaaagaccaattgatgtagagtttcagaaaggagatcag
ggacttcctggtgaccgagggcctcctggacctccagggatacgtggtcctccgggtcct
ccaggtggtgtgaaaggtgagaaaggtgagcaaggagagcctggcaaaagaggtaaacca
ggcaaagatggagagaatgggcagccaggaattccaggtttacctggtgatcctggttcc
cctggtgaaccaggaagggatggagaaaagggccaaaaaggtgacattggcccaactggg
cctcctggacttgtaatccctaggcctgggactggtgtaactgtgggagaaaaaggaagc
attgggttacctggcttgcctggagaaaaaggagagcgaggatttcctggaatacagggt
ccacccggcctccctggacctccagggactgcagttatgggtcctcctggcccccctggc
tttcctggagaaaggggccagaaaggtgatgaaggtccacctggactttctattcctgga
tctcctggacttgatggacagcctggggctcctggacttccagggcctcctggccctcct
ggccctcaaatccctcctagtgatgagatatgtgaagcaggccctccaggccctccagga
tctccaggtgatagaggactccaaggagaacaaggagtgaaaggtgacaaaggtgatacc
tgcttcaactgtattggaactggtatttcagggcctccaggtcaacctggtctgccaggt
cttccaggtcctccaggatctcttggtttccctggacagaagggagaaaaaggacatgct
ggtccaaccggtcccaaaggattaacaggcataccgggagctccaggtcctccaggcttt
cctggatctaaaggtgaacctggtgacatcctcacttttccaggaatgaagggtgacaaa
ggagagttgggttcccctggagcccccgggcttcctggtttacccggtacccctggacag
gatggactaccagggcttccaggccccaaaggagaacctggtggaattgcttttaagggt
gaaagaggcccccctgggaatccaggcttgccaggtctcccagggaatagggggcctatg
ggccctgtgggttttggccctccaggcccagtaggtgaaaaaggcatacaaggtgtggca
ggaaatccaggccagccaggaataccaggtcctaaaggtgatccaggtcagaccataacc
caacctgggaagcctggtctgcctggtaacccaggaagagatggtgaagtaggtcttcca
ggtgaccctggacttcccggccagccaggcttgccaggaatacccggtagcaaaggagaa
ccaggtatccctggaattgggcttcctggaccacctggtcccaaaggttttcctggaatt
ccaggacctccaggagcacctgggacacctggaagaattggtctagaaggcccttctggg
ccaccaggctttccaggaccaaagggagaaccaggacttgggctacctgggccacctggg
cccccaggactcccaggtttcaaaggaacacttggtccaaaaggggatcgtggtttccca
ggacctccaggtcctccagggcgtgctggcttggatgggcttcctggaccaaaaggtgat
attgggccaaatggacaacctgggccaatgggacctcctgggcttccagggataggtgtt
cagggaccaccagggccaccagggattcctggaccagtaggccaacctggcttacatgga
ataccaggagagaagggagatccaggacctcctgggtttgatgttctaggaccccctggt
gagagaggcagtccaggaattcctggagcacctggtcctatgggacccccaggatcacca
gggattccaggaaaagcaggtgcctctggatttccaggtgccaaaggtgaaatgggtatg
atgggacctccaggcccaccaggacctttgggaattcctggcaggagtggtgttcctggt
ctcaaaggtgataatggtttgcagggtcagccaggacctcctggccctgtaggagaaaaa
ggtggtaaaggagagcctggccttccaggccctcctggaccaatggatccagatctgctg
ggctcaaaaggagagaagggggaccctggattaccaggtattcctggagtttcgggtcca
aaaggttaccagggtttgcctggagacccagggcaacctggactgagtggacaacctgga
ttaccaggaccatcaggtcccaaaggtaaccctggtctccctgggaagccaggacttaca
ggacctcctggacttaaaggaagcattggtgatatgggttttccaggacctcagggtgtg
aaagggtctcctggacctcctggagttcctggacaacctggctccccaggattacctgga
cagaaaggagaaaaaggtgatcctggtatttcaggcattggtcttccaggtcttcctggc
ccaaagggtgaacctggtctgcccggatatccaggaaacccgggaatcaaaggttctatg
ggagatactggtttgcctggattaccagggacccctggagcaaaaggacatccaggcctt
cctggattccctggaaccccaggacttcctggaccaaaaggtattagtggtcctcctggg
aaccctggccttccaggagaacctggtcctgtaggtggtggtggtcgtcctgggccacca
gggcctccaggtgaaaaaggcagtccgggtcaagatggtatccctggcccagctggacag
aagggtgaaccaggtcaaccaggctttggaatcccaggaccccctggacttccaggactt
tctggtcaaaagggtgatggaggattacctggcattccaggaaaccctggacttcctggt
ccaaagggagaaccaggctttcagggttttcctggtgtgcagggtcccccaggccctcct
ggttctccaggtccagctctggaaggccctaaaggcgaccctgggccccaaggtcctcct
gggagaccaggtctaccaggtccagaaggtccccggggtctccctggaaatggaggtatt
aaaggagagagaggaaacccaggccaacctgggcaacctggtttgcctggtttgaaagga
gatcaaggaccaccaggactccagggtaatcctggtcggccaggtctcaatggaatgaaa
ggagatcctggtctcccaggtgttccaggatttccaggcatgaagggacccagtggaata
cctggttcaactggccctgaaggggatccaggacttgttggccccccaggtccccctgga
ttacctggtccttcaggacagagtattataatcaaaggagatgttggtccaccagggatc
ccaggccagcctggattaaaaggtctaccaggactaccaggacctcaaggcttaccaggt
ccaattggccctccaggagatcctggacgcaacggactcccaggctttgatggtgcagga
gggcgcaaaggagacccaggtctgccaggccagccaggtacccgtggtttggatggtccc
cctggaccagatggattgcagggtcccccaggccccccaggaacctcctctattgcccat
ggattcctcatcacacgtcacagccagacaacagacgcaccacaatgcccacatggaact
gtccagatttatgaaggcttttctctcctgtatgttcaaggaaataaaagagctcacggt
caagacttggggacggctggcagctgccttcgtcgcttcagtaccatgcctttcatgttc
tgcaacatcaataatgtttgcaactttgcttcaagaaatgactattcttactggctgtcc
accccagagcccatgccaatgagcatggaacccctgaagggccggagcatccagccattc
attagtcgatgtgcagtatgtgaagctcccgccatggtgattgcagttcacagtcagacc
atccagattccccactgtcctcagggatgggattctctctggattggctattccttcatg
atgcacacaagcgcaggagcagagggctcaggtcaagccctggcctcccctggttcctgc
ttggaagagttccgttcagctcctttcattgaatgtcacggccggggtacctgcaattac
tatgccaactcctacagcttttggctagcaactgtagatatgtcagacatgttcagcaaa
cctcagtcagaaacgctgaaagcaggagacttgaggacacgaattagccgatgtcaagtg
tgcatgaagaggacataa
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integrated database retrieval system
