Lynx rufus (bobcat): 124514995
Help
Entry
124514995 CDS
T08475
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
lruf
Lynx rufus (bobcat)
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lruf03041
]
124514995
Enzymes [BR:
lruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124514995
Spliceosome [BR:
lruf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124514995
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
Ank_2
AAA_19
HA2_N
nSTAND3
AAA_22
Ank
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
AAA_29
T2SSE
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
124514995
NCBI-ProteinID:
XP_046939422
LinkDB
All DBs
Position
Unknown
AA seq
1428 aa
AA seq
DB search
MSRPSSVSPRPPAPGGGGGPAPCGPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGDQR
EMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLTHN
TKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKRG
ESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPCR
IFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMA
GDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFGS
CPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQENTF
KPESQRQRTVPNVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKDV
DAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFSSQVEQLISMGANVHSKASNGWM
ALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVHTNGSDLSAEDRELLKAYHHSFDDE
KVDLDLIMHLLYNICHGCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFMLH
SNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVTM
LKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKL
LAPVNCPIADFLMKAPEPPPALIVRNAVHMLKTIDAMDAWEDLTELGYHLADLPVEPHLG
KMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALLR
AFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVN
TNSENWAVVKAALVAGMYPNVVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIPPANG
QAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTILVFCGPARLASNALQEPSSFRA
DGVPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRQKWHSLFLRRMRAPS
KPWSQVDEATIRAIIAVLSTEEQCAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRKTS
ADTEFSDESATAERVLMKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSVKSTDSSSYP
SPCASPSPPPSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNR
AFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWVRKESLPFQ
FAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPSGEKATTD
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctccccgcggccgcccgcgcctggtggcgggggcggcccc
gctccgtgcggtcctgggggcggaggccgggccaaggggctgaaggacattcgtatagac
gaggaggtgaagatcgcagtcaatatcgctctggagcgcttccgctacggggaccagaga
gaaatggaatttccttcctctttgaccagtactgaaagagcctttattcatcgattgagt
cagtctcttggtttggtttctaaaagtaaaggaaagggagcaaatagatacctaactgtg
aagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgactcataat
acaaaacatgctgttaggagcctaattcaaagatttcctgtcaccaataaagagcgtact
gaacttctgcctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaaccgggaa
atgagcaaaacgagtgggcgactcaacaatggcatacctcagattccagtgaaaagagga
gaatctgaatttgattctttcaggcagtctctgccagtgtttgagaaacaagaagaaatt
gttaaaataattaaagaaaataaagtagttttgattgtaggagaaactgggtctggaaag
actacacagattcctcagttccttttagatgattgctttaaaaatggtatcccctgccgt
atattttgtacccagccaagaaggttagcagctattgctgtggctgaaagagttgctgca
gagagaagagaaaggattggtcaaacgattggatatcagatccggttagaaagcagggtt
tctccaaagacacttctgacattttgcactaatggggtattgcttcgtacattgatggcg
ggagatagtacattgtcgactgtgacacatgttattgtggacgaagtacatgaaagggat
cgatttagtgattttttacttacaaagttaagagatctgttgcaaaagcacccaactttg
aaacttattctttctagtgccgccttggatgtaaatctttttataagatattttggaagt
tgcccagtgatctatatacagggaagaccttttgaagtaaaagaaatgtttctggaagac
atcttaagaactactggatacacaaacaaagaaatgttaaaatacaaaaaggaaaaacaa
cgagaagagaagcaacaaactactcttacagaatggtattcggctcaagagaatacattc
aagcctgagtctcagaggcagagaactgttccgaatgtgactgaagagtatgatttgttg
gatgatggtggtgatgctgtcttcagccagttgacagaaaaagatgtgaattgccttgaa
ccatggttaataaaggaaatggatgcttgtctttctgacatatggctacataaagatgtc
gatgccttcgctcaggtctttcaccttattttaactgaaaatgttagcgttgattatagg
catagcgaaaccagtgcaacagctctgatggttgctgctggacgaggtttttcaagtcaa
gtagagcagttaattagcatgggagccaacgtgcacagtaaagcgtcaaatggctggatg
gctttagattgggctaaacactttggacagactgaaattgtggatcttctggaatcttac
agtgcttcactggaatttggaaatctagatgaaagttctctggtacacacaaatgggagt
gacctcagtgcagaagacagagagctcctgaaagcttatcatcacagttttgatgatgaa
aaagtagacttggatttgatcatgcaccttctatacaatatctgccatggttgcgatgct
ggagcaatattaattttcctgcctggatatgatgaaattgttggactgcgggatcgtatc
ctgtttgatgacaagcggtttgctgataacacacacagatatcaagtctttatgcttcat
tcaaatatgcaaacatctgatcaaaagaaggtattgaaaaacccgcctgctggtgttcga
aaaattatcctttccaccaatattgctgaaaccagcatcacagtcaatgatgttgtcttt
gttattgattctggtaaggtgaaagagaaatcctttgatgcactgaattttgttacaatg
ttaaaaatggtgtggatttccaaagctagtgccatacaacgaaaaggcagggcagggaga
tgtagacctggaatttgtttccggctgttcagcagactccgattccagaatatgttggaa
tttcagactccagaacttttgagaatgccactacaggaactttgtttacatactaagctg
ttagccccagttaattgtcctattgccgatttcctaatgaaagctcctgaacctccacct
gctttaattgtaagaaatgctgtacacatgcttaagacaatagatgcaatggacgcgtgg
gaagatctcactgagcttgggtatcatttggctgacctgcccgtagaaccacatcttgga
aaaatggtcctgtgtgctgtcgtgttaaagtgtctggaccccatccttacaattgcctgc
accctggcctatcgagacccttttgtactgccaacccaggcctctcaaaagcgcgcagct
atgctctgtaggaaacgcttcactgcaggaactttcagtgaccacatggcacttctcaga
gcattccaggcatggcagaaagcacgaagtgatgggtgggagcgagccttttgcgaaaag
aattttctttcgcaagctaccatggaaataatcattggtatgagaactcagttgcttggt
cagcttagagcatcaggttttgttagagcacgaggcggtggtgacattcgagatgttaac
acaaattccgagaactgggctgtcgttaaagctgcattggtggcaggcatgtatcctaat
gtagtccatgtggacagagagaatgtagtactgacagggccaaaggagaaaaaagttcgg
tttcatcccacttcagttctcagtcagcctcagtataaaaagattcctccagccaatggt
caggctgcagcgattcaggcactacctacagattggcttatttatgatgaaatgaccagg
gcccatagaatagctaatattcgatgttgttcagcagtgacacccgtcactatattggta
ttctgtggaccagctagattggcaagtaacgctcttcaagaaccttcatcatttcgagcg
gatggtgttcctaatgacagtagtgatagtgaaatggaggacagaaccactgctaatttg
gcagctttgaaacttgatgagtggctcaatttcaaactagagcctgaggcagccagttta
ttgctgcagctcagacagaagtggcacagcttatttttacgccgaatgagagctccatcc
aaaccttggtctcaagttgatgaagctaccataagagcaattatagctgttttaagcact
gaggaacagtgtgcaggtttacagcagccgtctgggataggccagaggccaaggcctatg
tcttcagaagaacttcctttggcatcatcttggaggtccaataatagcaggaaaacttcc
gcagatactgaattttctgatgagtctgctactgcagaaagagtattgatgaaatctcca
tctccagcactacacccacctcagaagtacaaagatagaggaattttacatcctaaacga
agcactgatgaccgatcggatcagtcttctgtgaaatctacagacagcagtagttacccg
agtccttgtgccagcccttctcctccaccctcaggaaagggctcaaaatctccttcacca
agaccaaacatgcctattcgatacttcataatgaagagtagcaatttgagaaaccttgaa
atttctcagcagaagggtatctggtctacaacccctagtaatgagcggaagctaaatcga
gccttttgggaaagcagcatggtttacttggtattttctgttcaaggatctggacatttc
cagggattttctaggatgtcttcggagataggaagggagaagagccaggactggggctcc
gctggactgggaggagtgtttaaggtggagtgggtccggaaggagagtcttcccttccag
tttgcacaccatctacttaacccctggaacgacaacaagaaggtccagatcagcagagac
gggcaggagctcgagcctcaggttggtgaacagttgctccagttatgggaacgccttccg
tcgggagaaaaagccacgactgattga
DBGET
integrated database retrieval system
