Lynx rufus (bobcat): 124515348
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Entry
124515348 CDS
T08475
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf04820
Cytoskeleton in muscle cells
lruf04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124515348
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
124515348
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lruf00536
]
124515348
Glycosaminoglycan binding proteins [BR:
lruf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124515348
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
124515348
NCBI-ProteinID:
XP_046940113
LinkDB
All DBs
Position
Unknown
AA seq
1818 aa
AA seq
DB search
MERWSSRWKTKRWLWNFTITTLALTFLFQASEVRGAAPVDVLKALDFHNSPEGISKTTGF
CTNRKNSKGSDTAYRVSKQAQLSAPTKQLFSGGTFPEDFSILFTIKPKKGIQSFLLSIYN
EHGIQQVGVEVGRSPVFLFEDHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIV
DCKKKTTKPLDRSERAIVDTNGITVFGTRILDEEVFEGDIQQLLIIGDPKAAYDYCEHYS
PDCDSSVPQAAQAQEPQVDEKKKSNFKKKTRTVATNSKEKSKKFTPPKSEKFASKKKKSY
QATAKAKLGVKANIVDDFQEYNYGTEESYQTEAPRHVSGTNEPNPVEEVFTEEYLTGEDY
DSQRKNSEDTLYENKGIDGRDSDLLVDGDLGEYDFYEYKEYEDKPTSPTNEEFGPGVPAE
TDITETSINGHGAYGEKGQKGEPAVVEPGMLIEGPPGPAGPAGLMGPPGLQGPTGPPGDP
GERGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALR
GPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGR
GMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGEDGMRGEDGEIGPRGLPGEA
GPRGLLGPRGTPGPTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPI
GPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGAD
GVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPS
GQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPR
GSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHP
GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAK
GDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTA
GPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDK
GEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGAR
GFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSV
GGVGEKGEPGEAGNPGPPGEAGTGGPKGERGEKGEAGAPGAAGPPGAKGPPGDDGPKGNP
GPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAA
GAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQD
GPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDG
GIPGPAGPIGPPGPPGLPGPQGPKGTKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLPI
LSPKKTRRHAENMQADAGDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCK
DLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSWPKEKP
GSWFSEFKRGKLLSYLDVEGNSINMVQMTFLKLLTASARQNFTYTCHQSAAWYDVSSGSY
DKALRFLGSNDEEMSYDNNPFIKALYDGCASRKGYEKTVIEINTPKIDQVPIVDVMINDF
GDQNQKFGFEVGPVCFLG
NT seq
5457 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtggtcctctaggtggaaaacgaaacggtggctctggaatttcaccataaca
accctcgcactgactttcctcttccaggctagtgaggtcagaggagctgctccagtcgat
gtactaaaagctctagattttcacaattctccagagggaatatcaaaaacaacgggcttt
tgcacaaacagaaagaattcaaaaggttcggatactgcttacagagtttcaaagcaagca
caactcagtgctccaacaaaacaattattttcaggaggaacttttccagaagatttttca
atattatttacaataaaacccaaaaaaggaattcagtctttccttttatctatatataac
gagcatggtattcagcaagtcggtgttgaggttgggagatcacctgttttcctgtttgaa
gaccacactggaaaacctgcccctgaagactatcccctcttcagaactgttaacatcgct
gacgggaagtggcatcgggttgcaattagcgtggagaagaagactgtgacaatgattgtt
gattgtaagaagaaaaccacaaaaccacttgatagaagtgagagagcaatcgttgacacc
aatggaatcacggtttttggaaccaggattttggatgaagaagtttttgagggggacatc
cagcagctgttgatcataggtgaccctaaagcagcatatgactactgtgagcattacagt
ccagactgtgactcttcagtaccccaggccgctcaggctcaggaacctcaggttgatgag
aaaaagaaatccaatttcaaaaagaagacgaggacagtggccactaactcaaaggaaaag
tccaaaaagtttacaccccctaaatctgaaaaatttgcatccaagaagaagaaaagttat
caagcaacagcaaaagccaaactaggggtaaaggcaaatattgttgatgattttcaagaa
tacaactatggaacagaggaaagttaccagacagaagctcctaggcatgtatctggaaca
aatgagccaaatccagttgaagaagtatttactgaagaatatctaactggagaggattat
gattcccagaggaaaaattccgaggatacactatatgaaaacaaaggaatagacggcagg
gactctgaccttctggtagatggagatttaggcgaatatgatttttatgaatataaagaa
tatgaagataaaccaacaagccccactaatgaagaatttggtccaggtgttccagcagaa
acagatatcacagaaacaagcataaatggccacggtgcatatggagaaaaaggacagaag
ggagaaccagcagtagttgaacctggtatgcttattgaaggaccaccagggcctgcagga
cctgcgggtcttatgggtcccccaggtctacaaggccccactggaccccctggtgaccct
ggagagaggggccccccaggacgtcctggcttaccaggggctgatggtctacctggtcct
cctgggaccatgttaatgttaccgtttcgttatggtggcgatggttccaaaggaccaacc
atctctgctcaggaagctcaggcacaggcgattcttcagcaggctcggattgctctgaga
ggtccacctggcccaatgggtctaactggaagaccgggtcctgtgggggggcctggttca
tctggtgccaaaggtgagagtggtgatccaggtcctcagggccctcgtggtgttcaaggt
ccacctggtccaacgggaaaacctggaaaaaggggtcgtccgggtgctgatggaggaaga
ggcatgcccggagaacccggggcgaagggtgatcgaggatttgatggacttccgggtctg
ccaggtgacaaaggtcacaggggtgaacggggtcctcaaggtcctcctggtccccctgga
gaagatggaatgaggggagaagatggagaaatcggaccaaggggtcttccaggtgaagct
ggtcctcgaggtttgctgggaccaagggggactccaggacctacagggcagcctggtatt
gcaggtgtagacggccccccaggaccaaaaggaaacatgggtccccaaggggagcctgga
cctccaggtcagcaagggaatccaggacctcagggtcttcctggtccacaaggtccaatt
ggtcctcctggtgaaaaaggaccacaaggaaaaccaggacttgcaggacttcctggtgct
gatgggcctcctggtcatcctggaaaagaaggccagtctggagaaaaaggtgctctgggt
cctcctggtccacagggtcctattggttaccctggtccccgaggagtaaagggagcagat
ggtgtcagaggcctcaagggctctaaaggtgaaaagggtgaagatggttttccaggattc
aaaggtgacatgggtcttaaaggtgacagaggagaagttggtcaagtaggtccaagagga
gaagatggccctgaaggacccaagggtcgagcaggtccaactggagaccccggtccttct
gggcaagcaggagagaaggggaaacttggtgttccaggattaccaggatatccaggaaga
caaggtccaaagggttccactggatttcctgggtttccaggtgccaatggagagaaaggt
gcacggggtgtagctggcaaaccaggacctcggggtcaacgtggcccaacgggtcctcga
ggttcaagaggtgcgagaggtcccacggggaaacctggtccaaagggtacttcaggtggt
gatggccctcctggccctcctggtgaaagaggccctcaaggacctcagggtccagttgga
ttccctggacctaaaggtcctcctggaccacctgggaaggatggcctgccaggacaccct
ggacaacgtggagagactggatttcaaggcaagactggccctccaggaccagggggtgtc
gttggaccacagggaccaacgggtgagactggtccaatcggtgaacgaggacatcctggc
cctcccggccctcctggtgagcaaggtcttcctggtgctgcaggaaaagaaggtgcaaag
ggtgaccctggtcctcaaggtatctcagggaaagacggaccagcaggactgcgtggtttc
ccaggtgaaagaggtcttcctggagctcagggtgcacctggactgaaaggaggggaaggt
ccccagggcccaccagggccagttggctcaccaggagaacgcggatcagcgggtacagct
ggcccaattggattgccagggcgtccaggaccccagggtcctcctggtccagctggagag
aaaggtgctcctggagaaaaaggtccccaaggccctgcagggagagatggagtccaaggc
cctgtgggtctcccagggcctgctgggcctgcaggctcgcctggagaagatggagacaag
ggtgaaattggtgaaccaggacagaaaggcagcaagggtgacaaaggagaaaacggtcct
cctggacctccaggtcttcaaggtcctgttggtgcccctggaattgctgggggtgatggt
gagccaggtccccgaggtcagcaggggatgtttggacaaaagggtgatgagggtgcaaga
ggtttcccaggacctcctggtcccataggtcttcagggtctgccgggcccacctggtgaa
aaaggtgaaaatggggatgttggtcccatgggtccacctggtcctccaggcccaagaggc
cctcaaggtcccaatggagctgatggaccacaaggacccccaggatccattggttcagtt
ggtggtgttggagaaaagggtgagcctggagaagcagggaacccaggaccccctggggaa
gcaggcacaggcggccccaaaggagaaagaggagagaaaggagaagctggtgcacctggt
gctgctggacctcctggtgctaagggaccaccaggtgacgatggccctaagggtaacccg
ggtcctgttggttttcccggagatcctggtcctcctggagaacctggccctgcaggtcaa
gatggtgttggtggtgacaagggtgaagacggagatcctggtcaaccgggtccacctggc
ccatctggtgaggctggcccaccaggtcctcctggaaaaagaggccctcctggagcagca
ggtgcagagggaagacaaggagaaaaaggcgccaagggagaagcaggtgctgaaggccca
cctggaaaaactggcccagttggtcctcagggacctgctggaaagcctggtccagagggt
cttcggggcatccctggccctgtgggagagcaaggtctccctggagctgcaggtcaagat
gggcctcctggtcctatgggacctcctggcttacctggtctcaaaggtgaccccggttcc
aagggtgagaagggacatcctggtttaattggcctgattggtcctccaggagaacaaggt
gaaaagggtgacagaggactccctggaactcaaggatctccaggagcaaagggggatgga
gggattccaggtcctgctggtcccataggtccccctggtcctccaggcttaccgggtcct
caaggtccaaagggtaccaaaggctctaccggacctgctggccagaagggcgacagtggt
cttccagggcctcctgggcccccgggtccacctggagaagtcattcagcctttaccaatc
ttgtcacccaaaaaaacaagaagacatgccgaaaacatgcaagcagatgcaggtgataat
attcttgactactcagatggaatggaggaaatatttggttccctcaactccctgaaacaa
gacatcgaacatatgaagtttcccatgggtacgcagactaacccagctcgaacgtgcaaa
gacctgcaactcagccatcctgacttcccagatggtgaatactggattgatcccaaccaa
ggttgctcaggagattccttcaaagtttactgtaatttcacgtctggtggcgagacttgc
atttatccagacaaaaaatctgagggagtaagaatatcatcgtggccaaaggagaaacca
ggaagctggtttagtgaatttaagagaggaaaactgctttcctatttagatgttgaagga
aattccattaatatggtgcaaatgacattcctgaaactgctgactgcctctgctcggcaa
aatttcacctacacctgtcatcagtcagcagcctggtatgatgtgtcatcaggaagttat
gacaaagcactacggttcttgggatccaatgatgaggagatgtcctatgacaacaaccct
ttcatcaaagcactatatgatggctgtgcgtccagaaaaggctatgaaaaaactgtgatt
gaaatcaatacaccgaaaattgatcaagtacctatcgttgatgtaatgatcaatgacttt
ggtgatcagaatcagaaatttggatttgaagttggtcctgtttgttttcttggctaa
DBGET
integrated database retrieval system
