Lynx rufus (bobcat): 124517565
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Entry
124517565 CDS
T08475
Name
(RefSeq) NPC intracellular cholesterol transporter 1 isoform X1
KO
K12385
Niemann-Pick C1 protein
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
lruf04142
Lysosome
lruf04979
Cholesterol metabolism
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
124517565
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
124517565
09150 Organismal Systems
09154 Digestive system
04979 Cholesterol metabolism
124517565
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lruf02000
]
124517565
Transporters [BR:
lruf02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
124517565
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
ACR_tran
Motif
Other DBs
NCBI-GeneID:
124517565
NCBI-ProteinID:
XP_046942864
LinkDB
All DBs
Position
Unknown
AA seq
1302 aa
AA seq
DB search
MSAAPHQGSMTARGPALGFLLLLLCPAQVLAQSCIWYGECGIASGDKRYNCKYSGPPKPL
PKDGYDLVQELCPGFFFDNVSLCCDVQQLRTLKDNLQLPLQFLSRCPSCFYNLVNLFCEL
TCSPRQSQFLNVTATEDYVDPVTNQTKTNVKELQYYIGESFANAMYNACRDVEAPSSNDK
ALGLLCGKDAEACNATNWIEYMFNKDNGQAPFTITPIFSDLPTHGMEPMNNATKGCDESV
DEVTGPCSCQDCSIVCGPKPQPPPPPVPWRILGLDAMYVIMWITYMAFLLVFFGAFFALW
CYRKRYFVSEYTPIDSNIAFSVNANDRGMAWLLTSTLPSSPALPGEASCCDALGAAFEGC
LRRLFSQWGSFCVRNPGPIIFFSLAFIAACSSGLAFVRVTTNPVDLWSAPSSQARLEKEY
FDTHFGPFFRTEQLIIQAPHTSAHTYQPYPSGSDVPFGPPLDLAILHQVLDLQTAIENIT
ASYNNETVTLQDICVAPLSPYNKNCTILSVLNYFQNSHSMLDHEIGDDFFVYADYHTHLL
YCVRAPASLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYNDT
ERLQKAQVWEKEFINFVKNYKNPNLTISFTTERSIEDELNRESNGDIFTVIISYAIMFLY
ISIALGHIKSCSRLLVDSKISLGIAGILIVLSSVACSLGIFSYVGIPLTLIVIEVIPFLV
LAVGVDNIFILVQTYQRDERLHGETLDQQLGRVLGEVAPSMFLSSFSEAVAFFLGALSKM
PAVHTFSLFAGMAVLIDFLLQITCFVSLLGLDIKRQEKNRLDVLCCVRGSEDGTSVQASE
SCLFRLFKHSYSPLLLKDWMRPIVIAIFVGVLSFSVAVLNKVEIGLDQSLSMPDDSYVMD
YFKSLKYLHAGPPVYFVLEEGHDYTSLKGQNMVCGGMGCNNDSLVQQIFNAAQLDSYTRI
GFAPSSWIDDYFDWVKPQSSCCRVYNSTDRFCNASVVDPACIRCRPLTQEGKQRPQGGDF
MRFLPMFLSDNPNPKCGKGGHAAYSSAVNILGNDTGVGATYFMTYHTVLQTSADFTDAMR
KANLIASNITKTMGLEGSNYRVFPYSVFYVFYEQYLTIIDDTIFNLSVSLGAIFLVTVIL
LGCDLWSAVIMCITIAMILVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFT
VSMKGSRAQRAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLG
ATHGLIFLPVLLSYIGPSINKAKSLATQEQYKGTEREQLLNF
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagcaccgcaccaaggcagcatgaccgcgcgcggcccagccctcggcttcctg
ctgctgctgctgtgtcccgcgcaggtgttggcacagtcttgcatctggtatggagagtgt
ggaattgcatctggagataagaggtacaactgcaaatattcagggccaccaaaacccttg
ccgaaggatgggtatgacttagtgcaggagctctgtccaggattcttctttgacaatgtc
agtctttgttgcgatgtgcagcagctccggacactgaaagacaacctgcagctgcctcta
cagtttctgtccagatgtccatcctgtttctataacctagtgaacctgttttgcgagctg
acgtgtagccctcggcaaagtcagtttctgaatgttacagcaactgaagattatgttgat
cctgttacaaaccagactaaaacaaatgtaaaagaattacagtactacattggagagagt
tttgccaatgccatgtacaatgcctgccgggacgtggaggccccctccagtaatgacaaa
gccctgggactgctgtgtgggaaggacgccgaagcctgcaatgccactaactggattgag
tacatgttcaataaggacaacggccaggcacctttcaccatcacacccattttttcagat
cttccaacccatgggatggagcccatgaacaatgccaccaagggctgtgacgagtctgtg
gacgaggtcaccgggccgtgcagctgccaggactgctcaattgtttgtggcccaaagccc
cagcccccaccgcctcctgtgccctggagaatcttgggcctggacgccatgtatgtcatc
atgtggatcacctacatggcatttttgcttgtgttttttggagcattttttgctttgtgg
tgctacagaaaacgctattttgtctccgagtacacccccattgatagcaacatagctttc
tctgtaaatgccaatgacagaggaatggcttggctcttaacctccaccctcccttcctct
cccgctcttccaggggaggcgtcctgctgcgacgcgcttggtgcggcatttgagggctgt
ctgaggcggctcttctcacagtggggctctttctgcgtccgaaacccaggccccatcatc
ttcttctccctggccttcattgccgcctgttcttcaggcctggcgtttgtgcgggtcacg
accaatccagttgacctgtggtcagctcccagcagccaggcgcgcctcgagaaagagtac
tttgacacgcactttgggcctttcttccgcacggagcagctcatcatccaggccccccac
accagcgcacacacttaccagccgtacccctcaggatccgatgtgcccttcggacctccg
cttgacctcgcgatcttgcaccaggttcttgacttacaaactgccatcgaaaatatcact
gcatcttataacaatgagaccgtgacacttcaagacatctgtgtggcccccctgtcaccc
tataacaagaactgcaccattctgagcgtgttaaattacttccagaacagccattccatg
ctggaccatgaaataggagatgacttctttgtgtatgcagattaccacacgcacttgcta
tactgtgtacgggctcctgcctctctgaacgataccagtttgctccatgatccttgcctg
ggtacattcggtgggccagtgttcccgtggcttgtgttaggaggctatgatgatcaaaat
tacaataatgccacagcccttgtgattacctttcctgtcaataattactataatgataca
gagaggctccagaaggcccaggtctgggaaaaagagtttattaattttgtgaaaaactac
aagaatccaaatctgaccatttctttcactactgagcgaagtattgaagatgaactaaat
cgtgaaagtaacggtgatattttcactgttataatcagctatgccatcatgtttctgtac
atttccatagccttggggcacatcaaaagctgtagcaggcttctagtggactctaaaatc
tccctcggcatcgcggggatcctcattgtgttgagctcagtggcgtgctcgttgggcatc
tttagctacgttgggatccccctcaccctcattgtgatcgaagtcatcccattcctggtg
ctggctgttggggtggacaacatcttcattctggtccagacctaccagcgagatgaacgt
cttcacggagaaactctggatcaacagctgggcagggtcctaggagaagtggctcctagt
atgttcctgtcatccttttcagaggctgtagcatttttcttaggagcgctgtcaaagatg
ccggctgttcacactttctctctgtttgccgggatggcagtcctcatcgacttccttctt
cagattacctgtttcgtgagtctcttggggttagacattaagcgtcaggagaaaaaccgt
ctggatgttctttgctgtgtcagaggctctgaagatggaaccagtgtccaggcttcagag
agctgcttgtttcggctcttcaagcactcctattctccacttctgcttaaggactggatg
agaccaattgtgatagcgatatttgtgggtgtcctgtcattcagtgttgcagtcctgaac
aaagtggaaatcggattggatcagtctctttcaatgccagatgactcctacgtgatggat
tatttcaagtccctcaaatacctgcatgcaggtccacctgtgtactttgtcctggaggaa
gggcatgactacacctctctgaaagggcagaacatggtgtgcggaggcatgggctgcaat
aacgactccctggtgcagcagatattcaacgcggcccagctagacagctatacccgaata
ggctttgctccctcttcctggatcgacgattactttgattgggtcaagcctcagtcttct
tgctgtagagtctacaacagcaccgatcggttctgcaatgcttcagtggttgaccctgcc
tgcatccgctgcaggcccctcacccaggagggcaaacagaggcctcaaggtggagacttc
atgagattcctgcccatgttcctttctgataacccgaaccccaagtgcggcaaaggggga
catgctgcttacagttcggcagttaacatcctcggcaatgacacgggtgtcggagccact
tacttcatgacctaccacaccgtgcttcagacgtctgctgactttactgacgccatgaga
aaagccaacctcatcgccagtaacatcaccaaaaccatgggccttgaaggaagtaattac
cgtgtgttcccatacagtgtgttctatgtcttctacgaacagtacctgaccattattgat
gacacgatctttaacctcagcgtgtccctgggagccatcttcttggtgactgtgattctc
ctgggctgtgatctgtggtctgcagtgatcatgtgtatcaccatcgctatgatcttggtc
aacatgtttggcgtcatgtggctgtggggcatcagtctgaatgcagtttccttggtcaac
ttggttatgagctgtggcatttccgtggagttctgcagccacataacgagagcattcacg
gtgagcatgaagggcagccgtgcacaacgggcagaagaggcgctcgctcacatgggcagt
tctgtgttcagtggaatcacactaacaaaatttggagggattgtggtactggcctttgcc
aaatctcagattttccagatattttacttcaggatgtatttggctatggtcttactggga
gccacccacggcttgatcttcctcccggtcttactcagctacataggcccatcaataaat
aaagccaaaagcttggccactcaagagcaatacaaaggtacagagcgagaacaactccta
aatttctag
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