KEGG   Lynx rufus (bobcat): 124517789
Entry
124517789         CDS       T08475                                 
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
lruf  Lynx rufus (bobcat)
Pathway
lruf03013  Nucleocytoplasmic transport
lruf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lruf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124517789
  09122 Translation
   03013 Nucleocytoplasmic transport
    124517789
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lruf03019]
    124517789
   03041 Spliceosome [BR:lruf03041]
    124517789
Messenger RNA biogenesis [BR:lruf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     124517789
Spliceosome [BR:lruf03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    124517789
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st Beta-prop_IFT122_1st Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_WDR5 WD40_Prp19 Beta-prop_NOL10_N WD40_Gbeta WDR55 Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_EML_2 NBCH_WD40 Beta-prop_CAF1B_HIR1 WDR54 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_IP5PC_F Beta-prop_WDR36-Utp21_1st TRM82_WD Beta-prop_WDR75_1st CFAP251_N Beta-prop_EIPR1 DSE1_N ASA1 Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_VPS8 Beta-prop_DCAF4 Beta-prop_WDR41 PAC11
Other DBs
NCBI-GeneID: 124517789
NCBI-ProteinID: XP_046943315
LinkDB
Position
Unknown
AA seq 341 aa
MERAVPHAVPLGQIEVFQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALSSE
AKEESKKPVVTFQAHDGPVYCMVSTDRHLLSAGDGEVKAWLWAEILKKGCKELWRRQPPY
RTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTFTRALRGHTDYIHCLALRERS
PEVLSGGEDGTVRLWDLRSAQEVQTIEVYKHEECSRPHNGRWIGCLATDSDWMVCGGGPA
LTLWHLRSSTPTTVFPMRAPQKHVTFYQDLILSAGQGRCVNQWQLSGELKAQVPGSSPGL
LSLSLNQQPAAPECKVLTAAGNSCRVDVFTNLGYRAFSLSF
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggagcgagctgtgccacacgcagtacctctgggtcagatcgaagtgtttcaggccctg
cagcggctgcacatgaccattttctcccagagtgtctcaccctgcggcaagttcctggca
gctggcaacaattacgggcagatagccatcttcagtctgtctgccgctttgagctccgag
gccaaagaggaaagtaagaagcccgtggtgacattccaagcccatgacgggcccgtctac
tgcatggtctccacggatcgacatctgctcagtgccggggatggggaggtgaaagcctgg
ctctgggcagagatcctcaagaagggctgtaaggagctctggcgacgtcagcccccgtac
aggaccagcctagaagtgcctgagatcaatgctttgcttctggtccccaaggagaattct
ctcattctggcagggggagactgtcagctgcacaccatggaccttgagacggggaccttc
acacgggccctccggggccacacagactatatccactgcctggcgctgcgggagcggagc
cccgaggtcctgtcgggcggtgaagatggaaccgtgcgactttgggacctgcgctcagcc
caggaagtccagaccatcgaggtttataagcacgaggagtgctcccggccccacaatggg
cgttggatcggctgtttggctactgactcagactggatggtctgtggaggaggcccagca
ctcaccctctggcacctccgatcctccacacccaccaccgttttccccatgcgggcgcca
cagaaacacgtcaccttctaccaggacctgattctgtccgcgggccagggccgctgtgtc
aaccagtggcagctgagtggggaactcaaggcccaggtgcctggctcctccccagggctg
ctcagcctcagtctcaaccagcagccagcagcacccgagtgcaaggtcctgacagccgca
ggtaacagctgccgggtggatgtcttcaccaatctgggctaccgtgccttctccctgtct
ttctga

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