Lynx rufus (bobcat): 124517800
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Entry
124517800 CDS
T08475
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124517800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lruf03019
]
124517800
Enzymes [BR:
lruf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
124517800
Messenger RNA biogenesis [BR:
lruf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124517800
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
T6PP_C
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
124517800
NCBI-ProteinID:
XP_046943332
LinkDB
All DBs
Position
Unknown
AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLQKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGTLSYVSPNASKCPVTIPEDQKKF
IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTATEQLHEAGYDAYITGLCFLSMANYLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYADYVGKKHEEKQIKRKWTEDSWKEVERKRLN
TQCISYALQNHYHHANSLTSTSTVGKRNLSPSPAEADLETRISGEISDTELEQTESCAES
LSEGRKKAKKLKRMKKELSPAGGLPGSPAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcaaaaagtgtaccaggccatagag
gaggccgacttcttcgccatcgatggggagttttcaggaatcagtgatggaccttcagtc
actgcattaacaaatggttttgacactccagaagaaaggtatcagaagcttaaaaaacat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgactacacagat
tcaaagtatataacgaagtcatttaacttctatgttttcccgaaacccttcaatagatcc
tcgccagatgtcaagtttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagtttttcgcaatggaattccctatttaaatcaggaagaagaaaga
cagttaagggagcagtatgatgaaaaacgcctacagtccaatggtgcaggaactctgtct
tacgtatctcccaacgcgtcaaaatgtcctgtgacgattcctgaggatcagaagaagttt
attgaccaagtggtagagaaaattgaagatttattacaaagtgaagaaaacaagaacttg
gatttagagccatgtactgggttccaaagaaaactaatttatcagactttgagctggaag
tatcccaaaggcattcacgttgagactttagaaactgaaaagaaggagcgatacatcgtc
atcagcaaagtagatgaagaggaacgtaaaaggagggagcagcagaaacacgctaaagaa
caggaagaactgaatgacgctgtgggattttctagagttattcatgccattgccaattcg
ggaaaactcgtcattggacacaatatgctcttggatgtcatgcacacggttcatcaattc
tactgccctctgcctgcggacttaaatgagtttaaggagatgacaacatgtgttttcccc
agactcttggatacaaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatctcttgcagaactggaaaagcggttaaaagagacacctttcaaccctcctaaagtt
gaaagtgcagaaggttttccaagttacgacacagctactgagcaactccacgaggcaggc
tatgacgcttatatcacagggctgtgcttcctctccatggcgaactacctaggttctttt
cttagccctccaaaaattcacgtgtctgccagatcaaaactcattgaacctttttttaac
aagttatttcttatgagagtcatggatatcccctatctcaacttggaaggaccagacttg
caaccaaaacgcgatcatgttctccatgtgacattccccaaagaatggaaaaccagcgac
ctttaccagctttttagtgcctttggtaacattcagatatcctggattgatgacacatca
gcgtttgtctctctcagccagcccgaacaagtacagattgccgtcaataccagcaaatac
gcggaaagctatcggatccagacctatgctgactatgtgggaaaaaaacacgaggagaag
cagatcaagagaaagtggacagaagatagttggaaggaggttgagagaaagcggttaaac
actcagtgcatatcctatgctctgcagaatcactatcaccacgccaatagtcttacctcg
accagcacggtaggaaagagaaatctgagccccagcccagcagaagctgacttggagacc
agaatatcaggggagatttctgacactgagctggagcagacagagtcctgtgcagaatcc
ctctccgagggaaggaaaaaggccaagaaattaaaaaggatgaagaaggagctttcgcca
gcaggaggcctcccgggcagccctgccaagctcttcgaggttcccgacacgtggtaa
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