Lynx rufus (bobcat): 124518172
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Entry
124518172 CDS
T08475
Name
(RefSeq) ATP-dependent RNA helicase DDX55 isoform X1
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
lruf
Lynx rufus (bobcat)
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lruf03009
]
124518172
Enzymes [BR:
lruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124518172
Ribosome biogenesis [BR:
lruf03009
]
Eukaryotic type
Pre-60S particles
Helicases
124518172
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Helicase_C_2
DUF4746
Motif
Other DBs
NCBI-GeneID:
124518172
NCBI-ProteinID:
XP_046943955
LinkDB
All DBs
Position
Unknown
AA seq
775 aa
AA seq
DB search
MFSFGAFTFSEVNQRLLYQASGPHHQPYLSCIPFNLGLLGWGAFPSSPSRPTCPLARTRC
CAATGLRRAQKVSEPEQNPTRRKAAAETPARGGKAPEPRWLRGTDSTTRDLVRLPLSGGQ
LSSLLPRGRFPHPAELCYRSSVPGGPEGFRKRKCSLAAPRRHPGGSGGGGGRARAMEHVT
EGSWESLPMRLHPRVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVI
PVLEILLRREEKLKKHQVGALIITPTRELAIQIDEVLAHFTKPFPQFSQILWIGGRNPGE
DVERFKEQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASI
NTILEFLPKQRRTGLFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLKNY
YMVCKADEKFNQLVHFLRNHKQEKHLIFFSTCACVEYYGKALESLVKGVKIMCIHGKMKH
KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHG
GSALVFLLPMEESYVSFLEINQKCPLQEMQLQKNTGDLLPKLKSMALADRAVFEKGMKAF
VSYVQAYAKHECGLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFLPADVNTDTIP
FKDKIREKQRQKLLEQQRKEKRENEGRKKFTKNKAWSKQKAKKEKKKKMNAKRKREEGSD
IEDEDMEELLNDTRLLRKFKKGKITEEEFEKGLLVSGKRTVTTADVGIPAWEPDC
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgttctcctttggggctttcactttctcggaagtaaaccaacgtctattgtaccaggca
tcgggtccccaccatcaaccctatctatcttgcataccttttaacctgggtctcctgggc
tggggtgcatttccgtccagtccctccagacccacttgtcctttggccaggacgcggtgt
tgtgctgccaccggcctccgacgggcgcagaaagtgagcgaaccggagcagaatcccacc
cgccgaaaagccgccgcagaaacgcctgctcgcggggggaaggcgcccgagcccaggtgg
ctgcgcgggacggacagtacaactcgggacctggtccggcttccactctccggcggtcag
ctttccagcctcctgccgcgagggcgctttccccaccctgcggaactttgctaccggagt
tcggttcccggcggtcccgagggcttccggaagcggaagtgctcgctggcggcgcccagg
cggcatcccggcggcagcggcggcggcggcggccgggcgcgcgctatggagcacgtgacg
gagggctcctgggagtcgctgccgatgcggctgcacccgcgggtgctgggtgcgctgcgg
gagctgggcttcccgtacatgacgccggtgcagtctgcaaccatccctctgttcatgaga
aataaagatgtcgctgcagaggcggtcacgggtagtggcaaaacactcgcttttgtcatt
cccgtcctggagattcttctgagaagggaagagaagttaaaaaagcatcaggtgggagcc
ttaatcatcacaccgacgcgagagctggctattcagatagacgaggtcctagcgcatttc
acgaagcccttcccacagttcagccagattctctggatcggaggcaggaatcctggagaa
gatgttgaaaggtttaaggagcaaggtgggaacatcattgtggccactccaggccgtttg
gaggacatgttccggaggaaggcagagggcttggatttggccagctgtgtgaggtccctc
gacgtcctggtgttggatgaggcagacagacttctggacatggggtttgaggcaagcata
aataccatcctggagtttttgccaaagcagaggagaacaggccttttctccgccactcag
acacaggaggtggagagcctggtgagagcggggctccggaaccccgtgcggatctcggtg
aaggagaagggcgtggcggccagcagcacccagaaaactccttcccgcctgaagaactac
tacatggtatgtaaggcagatgagaaatttaaccagctggtacattttcttcgaaatcat
aagcaggaaaagcacctgattttcttcagcacctgcgcctgtgtggaatactatggaaag
gccctggaatccctggtgaagggtgtgaagattatgtgcattcacgggaagatgaaacat
aagcgcaacaagatcttcatggagttccgcaaattgcaaagtgggattttagtgtgcaca
gatgtcatggcccgaggaatagatattcctgaagtaaactgggttttgcagtacgaccct
cccagcagcgcaagtgcctttgtgcatcgctgtggccgcacagcccgcatcggccacggt
ggcagcgcgctcgtgttcctccttcccatggaagagtcatacgtcagtttccttgaaatt
aaccaaaaatgccccctgcaggagatgcaactccagaaaaacacaggagacctccttcca
aagctcaagtccatggccctggctgacagagctgtgtttgaaaagggcatgaaggccttt
gtgtcatacgtccaggcatatgccaagcacgaatgcggcctcatcttcagattaaaggat
cttgattttgctagtcttgctcgagggtttgccctgctgaggatgcccaagatgccagaa
ctgagaggaaagcagtttccagattttttgcctgcagatgttaatacagacaccattcca
ttcaaagataaaatcagagagaagcaaagacagaagctactagagcaacagagaaaagag
aaaagagaaaacgaagggagaaaaaaattcacaaaaaataaagcttggtcaaagcagaag
gccaaaaaggagaagaagaagaaaatgaatgcaaaaaggaagagggaagagggttctgat
atcgaagatgaggacatggaggaacttcttaatgacacgaggctcttgagaaagtttaag
aaaggcaagattactgaagaagagtttgagaaggggttgttggtgagcggcaagagaaca
gtcaccacagcagacgtggggatccccgcctgggaacctgactgctga
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