Lynx rufus (bobcat): 124518231
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Entry
124518231 CDS
T08475
Name
(RefSeq) ataxin-2 isoform X1
KO
K23625
ataxin 2/2L
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf05014
Amyotrophic lateral sclerosis
lruf05017
Spinocerebellar ataxia
lruf05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
124518231
05017 Spinocerebellar ataxia
124518231
05022 Pathways of neurodegeneration - multiple diseases
124518231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lruf03019
]
124518231
Messenger RNA biogenesis [BR:
lruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124518231
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
LSM
Motif
Other DBs
NCBI-GeneID:
124518231
NCBI-ProteinID:
XP_046944069
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Position
Unknown
AA seq
1300 aa
AA seq
DB search
MRSAAAAPRGPAAAIEPRRFAAARWPGRRSLPRPARRGGRGGGGGAAPGPYPSAAPPPPG
PGPPPSGQRSPPSASDCFGSNGNGGGASLPGSRRLLGFSGPPRPFVVLLLPLAGPGAPPA
APSRASPLGARASPPRSGVSSARPAPGCPRPACGPVYGPLTMSLKPQQQQQQQQQPPAAA
NARKPGGSGGLLTSPATAPSPSSISSSSAVASSSSVAAASAGGGRPGLGRGRNSKGLPQS
TISFDGIYANMRMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSMES
SSGPKREEIMESILFKCSDFVVVQFKDMDSSYARRDAFTDSAISAKVNGEHKEKDLEPWD
AGELTTSEELEALENDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFL
KREARANQLAEEIESSAQYKARVALENDDRSEEEKYTAVQRNSSEREGHGINTRENKYIP
PGQRNREVISWGSGRQNSPRMGQPGSGSMPSRSTSHTSDFNPNSGSDQRVVNGGVPWPSP
CPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMPKRM
SSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLEFVSHTPPSEAAAPPAARTSPAGGTWSS
VVSGVPRLSPKTHRPRSPRQNSIGNTPPGPVLGSPQAGIIPAEAVAMPVPAASPTPASPA
SNRAVTPSIEAKDSRLQDQRQNSPAGNKENMKPSETSPSFSKTENKGISPIVSEHRKQID
DLKKFKNDFRLQPSSTSESMDQLLNKNREGEKSRDLVKDKIEPNAKDSFVENSSSNCTSG
SSKPSSPSISPSVLSNAEHKRGPEVTSQGVQTSSPGCKQDKDDKEEKKDAAEQVRKSTLN
PNAKEFNPRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVS
PGVQPLYPIPMTPMPVNQAKTYRAGKVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPA
YSTQYVAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNARMMAPPAHAQPGLVSSSAT
QYGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATP
TGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQS
PQNSFPTAQQTVFTIHPSHVQPAYTNPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQP
PGGPQAALAQSALQPIPVSTTAHFPYMTHPSVQAHHQQQL
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcggcggccgcagctcctcggggccccgcagcggccatcgagccacgccgcttc
gccgcggccaggtggcccgggcggcgctcgctcccgcggccggcgcggcggggcgggcgg
ggcggcggcggcggcgcggctccgggcccgtatccctccgccgcccctcccccgcccggc
cccggcccccctccctccgggcagcgctcgcctccctccgcctcagactgttttggtagc
aacggcaacggcggcggcgcgtccctgcccggctcccggcggctcctcggtttcagcggg
cctccccgccccttcgtcgttctccttctccctctcgccggcccgggcgcccccccggcc
gcgccatcccgcgcctccccgctcggcgcccgcgcgtccccgccgcgctccggcgtctct
tcggcgcgcccggctcccggctgtccccgcccggcgtgcgggccggtgtatgggcctctc
accatgtcgctgaagccccagcagcagcagcagcagcagcagcagccgcccgcggctgcc
aatgcccgtaagcccggcggcagcggcggccttctcacgtcgcccgccaccgcgccgtcg
ccgtcctcaatctcgtcgtcttcggcagtggcttcctcctcctcggtggcggcggcgagc
gcaggcggcgggcggcccggcctgggcagaggtcgaaacagcaaaggactgcctcaatct
acgatttcttttgatggaatctatgcaaatatgaggatggttcatatacttacatcagtt
gttggatccaaatgtgaagtacaagtgaaaaacggaggtatatatgaaggagtttttaaa
acctacagtcctaagtgtgatttggtacttgatgctgcacatgagaaaagtatggaatcc
agttcggggccaaaacgtgaagaaataatggagagtattttgttcaagtgttcagacttt
gttgtggtacagtttaaagacatggactccagttatgcaagaagagacgcttttactgac
tctgctatcagtgctaaagtgaatggtgaacacaaagagaaggacctggagccctgggat
gcaggtgaactcactaccagtgaggaactggaggctttggaaaacgacgtatctaatgga
tgggatcccaatgatatgtttcgatataatgaagaaaattatggtgtagtgtctacatat
gatagcagtttatcttcatatacggtacccttagaaagggataactcagaagaattttta
aaacgagaagcaagggcaaaccagttagcagaagaaattgaatcaagtgcccagtacaaa
gcccgagtggccctggaaaatgatgataggagtgaagaagaaaaatacacagcagttcag
agaaattcgagtgaacgtgagggccacggcataaacactagggaaaataaatatattcct
cctggacaaagaaacagagaagtcatatcctggggaagtgggagacagaattcaccgcgt
atgggccagcctggatcgggctccatgccgtcaagatccacctctcacacttcagatttc
aacccgaattctggttcagaccaaagagtagttaatggaggtgttccctggccatcgcct
tgcccatctccttcctctcgcccaccttctcgctaccagtcaggtcccaactctcttcca
cctcgggcagccacccctacacggccgccctccaggcccccctcgcggccatccagaccc
ccgtctcacccctctgctcatggttctccagctcctgtctctactatgcctaaacgcatg
tcttcagaagggcctccgaggatgtccccaaaggcccagcgacaccctcgaaatcacaga
gtttctgctgggaggggttccatttccagtggcctagaatttgtatcccatactccacca
agtgaagcagctgctcctccagcagcaaggaccagtcctgcggggggcacatggtcatca
gtggtcagcggggttccaagattatcccctaaaactcacagacccaggtctcccaggcag
aacagtattggaaatactcctcctgggccagttcttggttctccccaagctggtattatt
ccagctgaagctgttgctatgcctgttccagctgcatctcccacgcctgccagtcctgca
tccaatagagctgttaccccatctattgaggctaaggattccaggcttcaagatcagagg
cagaattctcctgcagggaataaagaaaatatgaagcccagtgaaacatcacctagcttc
tcaaagactgaaaataaaggtatatccccaattgtttctgaacatagaaaacagattgat
gacttaaagaagtttaagaatgattttaggttacagccaagttctacttctgaatctatg
gatcaactgctaaacaaaaatagagagggagaaaaatcaagagatttggtcaaagacaaa
attgaaccaaatgctaaggattctttcgttgaaaatagcagcagcaattgcaccagtggc
agcagcaaaccgagcagtcccagcatttccccttcagtcctcagtaatgcggagcacaag
aggggacctgaggtcacatcccaaggggttcagacttccagtccgggatgcaaacaagat
aaagatgataaagaggagaagaaagatgcagctgagcaagtgagaaaatcaacactgaat
cctaatgcaaaggagtttaaccctcgttccttttctcagccaaagccttctaccacccca
acttcacctcgtcctcaagcacaacctagcccatctatggtgggtcatcagcagccagct
ccagtttatactcagcctgtctgttttgcaccaaatatgatgtatccagtcccagtgagc
ccaggcgtgcaacctttataccctatacctatgacgcccatgccagtgaatcaagccaag
acatatagagcaggtaaagtaccaaatatgccccaacagcggcaagaccagcatcatcag
agcaccatgatgcacccagcctcagcagcaggcccaccgattgtggccaccccaccagct
tattccacacaatatgttgcctatagtcctcagcagtttccaaatcagcctcttgttcag
catgtgccacattatcagtctcagcatcctcatgtctatagtcctgtaatacagggtaat
gctagaatgatggcaccaccagcacatgcccagcctggtttagtgtcttcttcagcaact
cagtacggggctcatgagcagacgcatgcgatgtatgcatgccccaaattaccatacaac
aaggagacaagcccttctttctactttgccatttccactggctcccttgctcagcagtat
gcgcaccctaatgctaccctgcacccacatactccacatcctcagccttcagctactccc
accggacagcagcaaagccaacatggtggaagtcatcctgcacccagtccggttcagcac
catcagcaccaggccgcccaggcgctccatctggccagtccacagcagcagtcagccatt
taccacgcggggctcgcaccaaccccaccttccatgacccctgcctccaatacgcagtcg
ccacagaatagtttcccaacagcacaacagaccgtctttacgattcatccttctcatgtt
cagccggcatacaccaatcctccccacatggcccatgtacctcaggctcatgtacagtca
ggaatggttccttctcatccaactgcccatgcgccaatgatgctaatgacgacacagcca
cccggcggtccccaggccgccctcgctcaaagtgcactacagcccattccagtctcgaca
acagcgcatttcccctatatgacgcacccttcagtacaagcccaccaccaacagcagttg
taa
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