KEGG   Lynx rufus (bobcat): 124518618
Entry
124518618         CDS       T08475                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
lruf  Lynx rufus (bobcat)
Pathway
lruf03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:lruf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    124518618
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lruf03021]
    124518618
   03036 Chromosome and associated proteins [BR:lruf03036]
    124518618
Transcription machinery [BR:lruf03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     124518618
   Coactivators
    SAGA/TFTC/STAGA complex
     124518618
Chromosome and associated proteins [BR:lruf03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     124518618
    STAGA complex
     124518618
    TFTC complex
     124518618
    SAGA complex
     124518618
    SLIK complex
     124518618
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd TFIID_NTD2 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_IFT140_1st NBCH_WD40 RMC1_N Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_WDR19_1st WD40_RFWD3 PEP5_VPS11_N PROPPIN Beta-prop_IP5PC_F eIF2A Ge1_WD40 WD_LRWD1 Nbas_N Mala_s_1-like vATP-synt_AC39
Other DBs
NCBI-GeneID: 124518618
NCBI-ProteinID: XP_046944553
LinkDB
Position
Unknown
AA seq 589 aa
MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSA
APCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFY
SRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQ
SDNNTALCKVLTLHIHLDVQPAKRTDYQLYASGGSSRSEGNGLEPADMPAPILQNEAALE
VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSR
KLKSEPHQVDVSRIHLACDILEEEDDEDDNAGTEMKILRGHCGPVYSTRFLADSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNG
KYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIR
NTYCSAPADGSSGELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgaaacgagtgcgcaccgagcagattcagatggcagtgtcctgctacctcaaacgccgg
cagtatgtggactccgatggtcccctaaagcaaggactgcggctgtcacagactgctgag
gagatggcagccaacctcacagtccaatccgaatccggttgtgccaacatcgtgtccgca
gccccttgccaggcagagccccagcaatatgaagtacagtttggacgactacggaatttt
ctcactgattctgattcccagcatagccacgaagtgatgcctctcctctatcctctcttt
gtctacctccatctcaacctggtccagaacagtcctaagagcacagtggaaagtttttac
agccgcttccatgggatgtttctgcagaacgctagccagaaggatgtcattgagcagcta
cagaccactcaaaccatccaggacatcctgtctaacttcaagcttcgagcattcctagat
aacaagtacgtggtccgtctccaggaagacagctacaactacctgatccgctacctccaa
agtgacaacaacaccgccctgtgcaaagtcctcaccttgcatatccatcttgacgtgcag
cctgccaagagaacagattaccagctctacgccagcggcggctcctcccggagcgagggc
aacggcttagagcccgccgacatgcccgcccctatcctgcagaacgaggctgccctggag
gtcttgcaggagagcattaagcgcgtcaaggacggccctccctccctcaccaccatctgt
ttctatgccttctataacacagagcagctgttgaacactgcggaaatctccccagacagc
aagctgcttgctgcggggtttgacaactcctgtataaaactgtggagtttacgatccagg
aagttaaagtcagaaccccatcaagtagacgtgtcccgcatccacttggcttgtgacatt
ctggaggaggaggatgatgaggatgataatgcgggcacagagatgaagatactacgggga
cactgtggaccagtatacagcacaaggttcctcgcagacagctcagggttgctctcttgt
tctgaagacatgtccattaggtactgggacctcgggagtttcaccaacactgtgttatac
caaggacatgcctaccctgtgtgggacctggacattagcccatatagcctgtactttgcc
agcgggtcccatgaccgcaccgcgaggctatggtcatttgatcggacgtacccgctgagg
atatatgccgggcacctggcagatgtggactgtgtcaaattccaccctaattcgaactac
ttagccacaggctcgaccgacaagactgtccggctgtggagtgcccaacaggggaactca
gtgaggctcttcaccggccaccgcggccccgtgctctctctcgccttttctcccaacggt
aagtacttggcctcggccggcgaggaccagcggctgaagctgtgggacttggcctctggg
accctttataaagaactgaggggccatacggacaacatcaccagcctcaccttcagtccg
gacagtagtctgatcgcctccgcgtccatggacaactcggtgcgcgtctgggacattagg
aacacgtactgcagcgcccctgccgacggctcctctggcgaactcgtgggcgtgtacacc
gggcagatgagcaatgtactgagcgtgcagttcatggcctgcaaccttcttctagtgact
ggaatcacacaagaaaatcaggaacattaa

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