Lynx rufus (bobcat): 124520012
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Entry
124520012 CDS
T08475
Name
(RefSeq) ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124520012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lruf03041
]
124520012
03009 Ribosome biogenesis [BR:
lruf03009
]
124520012
Enzymes [BR:
lruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124520012
Spliceosome [BR:
lruf03041
]
Complex A
U2 snRNP components
U2 related factors
124520012
Complex B
124520012
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
124520012
Ribosome biogenesis [BR:
lruf03009
]
Eukaryotic type
90S particles
Helicases
124520012
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
nSTAND3
Atrophin-1
AAA_29
Flavi_DEAD
AAA_25
Motif
Other DBs
NCBI-GeneID:
124520012
NCBI-ProteinID:
XP_046946488
LinkDB
All DBs
Position
Unknown
AA seq
795 aa
AA seq
DB search
MSKRHRLDLGEDYPSGKKRAGTDGKDRDRDRDREDRSKDRDRERDRGDREREREKEKEKE
LRASTNAMLISAGLPPLKASHSAHSTHSAHSTHSTHSAHSTHTGHAGHTSLPQCINPFTN
LPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRS
LPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGM
LLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKF
QIYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQE
EIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVS
TNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGK
CFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRAL
ELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCF
VRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNHESVQWCYDNFINYRSLMSADNV
RQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQ
LHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQL
DRIIAKLQSKEYSQY
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcggcaccggttggacctgggggaggattacccctctggcaagaagcgtgcg
gggaccgatgggaaggatcgagatcgtgaccgggatcgtgaagatcggtctaaagatcga
gaccgagaacgtgatagaggagatagagagcgggagagggaaaaagaaaaggagaaggaa
ttgcgagcttcgactaatgctatgcttatcagtgctggattaccacctttaaaagcttcc
cactcagctcactcaacccactctgctcattcaacacattcgacacattctgctcattca
acacacaccggacatgcaggacacacatcacttccacagtgcattaatccatttaccaac
ttaccccatactcctcgatactatgatattttaaagaaacggcttcagctccctgtttgg
gaatacaaggataggtttacagatattctggttagacatcagtcctttgtactggttggt
gagactgggtctggtaaaacaacacagattccacagtggtgtgtggagtacatgcgatca
ttaccaggacccaagagaggagttgcctgtacccaacccaggagagtggctgcaatgagt
gtggctcagagagttgctgatgaaatggatgtgatgttgggccaggaagttggttactcc
attcgatttgaagactgcagtagtgcaaaaaccattcttaagtatatgactgatgggatg
ttacttcgtgaagctatgaatgatcccctcctggagcgttatggtgtaataattcttgat
gaggctcatgaaaggacattggctacagatattctcatgggtgttctgaaggaagttgta
agacagagatcagatttaaaggttatagttatgagcgctaccctggatgcagggaaattc
cagatttactttgataactgtcctctcttaactattcctgggcgtacacatcctgttgaa
atcttttatactcctgaaccagagagagattatcttgaagcagccattcgaacagtgatc
caaattcatatgtgtgaagaggaggagggagatcttttacttttcttaactggtcaagag
gaaattgatgaagcctgtaagagaataaagcgtgaggttgatgatttgggccctgaagtt
ggtgacattaaaatcattccattatactctacacttccacctcagcagcaacaacgcatt
tttgagcctccgcctccaaaaaagcagaatggagcgattggaagaaaggtagttgtgtca
actaacatcgcagaaacgtctttgacaatagatggtgtggtatttgtgatcgatcctgga
tttgcaaaacagaaggtgtacaatcctcgtatcagagttgagtctcttttggtgacagcc
attagtaaagcttcagctcaacagagggctggtcgagctgggcgtaccagacctgggaaa
tgcttcagactttataccgagaaagcttacaaaacagaaatgcaggataacacctatcct
gagattttgcgttctaatttaggatcagtagtgttacagttgaagaagcttggtattgat
gatttggtgcattttgactttatggatccaccagctcctgaaactctgatgagagcccta
gaacttttgaattacctggctgctttaaatgatgatggagatctgaccgaattgggatcc
atgatggcagagtttcctctagacccacagctcgctaaaatggttattgcaagttgtgac
tacaactgttctaatgaggtcctatctattactgctatgttgtcagtcccacagtgtttt
gttcgccccacggaggccaagaaagccgcagatgaagccaagatgagatttgcccacata
gatggagatcatctgacactgctgaacgtctaccacgcttttaaacaaaatcatgaatcg
gttcagtggtgttatgacaacttcattaactacaggtccctgatgtcagcagataatgta
cgccagcagctgtcgagaattatggacagatttaatttgcctcgtcgaagtactgacttt
acaagcagggactattatatcaatatacgaaaagctttggttactgggtattttatgcag
gtggcacatttagaacgaacagggcattacttaactgtgaaggataaccaggtggttcag
ttgcatccctctactgttcttgaccacaagcctgaatgggtgctttacaatgagtttgtt
cttacaacaaagaattacatccggacgtgtacggatatcaagccagaatggttggtgaaa
attgcccctcaatattatgacatgagcaatttcccacagtgtgaagcaaagagacagttg
gaccgcatcattgccaaacttcaatccaaggaatattcacagtactga
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