Lynx rufus (bobcat): 124520840
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Entry
124520840 CDS
T08475
Name
(RefSeq) synaptopodin-2
KO
K24066
synaptopodin-2
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124520840
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lruf04990
]
124520840
Domain-containing proteins not elsewhere classified [BR:
lruf04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
124520840
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
Calsarcin
PDZ_6
PDZ_2
CFAP298
Motif
Other DBs
NCBI-GeneID:
124520840
NCBI-ProteinID:
XP_046947894
LinkDB
All DBs
Position
Unknown
AA seq
1262 aa
AA seq
DB search
MGTGDFICISMTGGAPWGFRLQGGKEQKQPLQVAKIRSQSKASGSGLCEGDEVVSINGNP
CADLTYPQVIKLMESITDSLQMLIKRPSSGVNETSISETENKNPEHPTHERCVESTTLQI
RPATKNQHREFYVASIKSGVPLTEDQGSGPGFSESIKEETGLSYHVAPYMPDSQRGRLAE
EVILREKAEAGQPGPVVELQLSLSQERHKGTNVPVVALLGAEKSKSPDPDPYLQHDRIVH
INSVPTNEKGEPSLRSSKIIQISSGKELKVIQGNEAGDKGLPRVEVILDCLDRQKTEGCR
LQAGKGCVDSPVEGGQSEAPPSLVSFAVSSEGTEQGEDPRLERDHSRPHKHRARHARLRR
SESLSEKQVKEAKSKCKSIALLLTDAPNPNSKGVLMFKKRRRRAKKYTLVSYGTGELERE
ADEEEEGDKEDNCEVAFLGTSESEVDEELLSDIDDSAQVVNFDWDSGLVDIEKKLNRGDK
MEMLPDTTGKGALMFAKRRERMDQITAQREEERMGGVPGREPDAAQTDSLRTMASYQRKE
EESVKVQSSVSRSYIEVSHGLGHGPQQNGFSGVSETAEAQRTVPMNRTAKPFPGSVSQPA
APFSPTRNMTSPIADFPAPPPYSAVTPPPEGFPRAVSSPTAGPAQPPPWPQPAPWSQPAF
YDSSERIASRDERIAVPAKRTGILQEAKRRSTTKPMFTFKEPKVNPNPELLSLLQNSEGK
KGAGAGGDSGPEEDYLSLGAEACNFMQSSSAKQKTPPPVAPKPAVKSSSSQPVTPVSPVW
SPGMAPSQPPAFPTSNPSQGTVVSSIKIAQPSYAPARPTSALTLAGPFKGPQAAVASPNY
TPKPTAPALTVNAAHAGAVGPSNELPGMSGKGAQLFAKRQSRMEKYVVDSDTVQAHAARA
QSPTPSLPAGWKYSSNVRAPPPVAYNPIHSPSYPLAAVKSQSSAPQASKTSKKKGKKPLN
ALDVMKHQPYQLNASLFTFQPPDAKDGLLQKSSIKVNSMPAMKQALPPRPVNAGSPTNAQ
ASSVYSVPAYSSQHPFFAEATSPVSASPVPVGIPTSPKQESASTSYFVAPRPKFSAKKSG
VTVQEIGRSLSLPGRPVPPTISTTSPWIYQPGYSYSSKPTDGLEKANKRLTPWEAAAKSP
LGLVDDAFKPRNIQESIVANVVSAARRKVLPGPSDDWNKRLSCVPQAQKASMGSFARQEY
NVASLPDNNMPTNSQYGSQVSYAYYRQPSRNDSEIMSMETRSDYCLSIADYNYNPHPRGW
RR
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atgggcacgggggattttatctgcatttccatgaccggaggggcgccctgggggttcaga
ttgcaaggtggcaaggagcagaagcagcccttacaagttgctaagatccgaagccagagc
aaagcctctgggtctgggctctgtgagggggatgaagtggtttctatcaatggcaaccct
tgtgcagaccttacctacccccaggtcatcaagctcatggagagcataacagactctctc
caaatgctcatcaaaagaccatccagtggagtaaatgagacttccatctctgaaactgaa
aacaaaaaccctgagcatcccacccatgagcggtgcgtggaaagtaccactctgcagatt
cgaccagccacaaagaaccagcacagagagttctatgttgcctcgatcaagagtggagtt
cctctaactgaggaccaagggagtggtcctggtttttctgagagcataaaagaagaaaca
ggcctgagctaccatgtggctccctacatgcccgactcccaaagaggacgcctagcagag
gaggttatcttaagggagaaggcagaagctgggcagccaggcccggtggttgagttacaa
ctgtccctttcacaagagagacacaagggcacaaatgtccccgtggtggctctcctggga
gctgaaaaatctaagtctcctgacccagatccttatttacaacacgacaggattgtccac
ataaattcggtccccacgaatgagaaaggggagccttctctgaggtccagcaagataatc
cagatctccagtggcaaagagttaaaagtgatccagggaaatgaagcaggagacaagggg
ctgccccgagtggaagtgatactcgactgcttggacaggcagaagacggaagggtgcagg
cttcaggcaggaaaggggtgtgtggattctccagtggaaggagggcagtcagaagcacct
ccttctctggtatcctttgcagtctcatcagaaggcacagagcagggagaagatccacgc
ttggaaagggatcacagcagacctcacaagcacagagcgcgtcacgcacggctcaggaga
agtgaaagcctatcagaaaagcaggtgaaagaagcaaaatctaaatgcaaaagcattgcc
ctccttctaaccgacgcccccaaccccaactccaagggggtgttgatgtttaagaagcgt
cgtaggcgggccaagaaatacaccctagtcagctacggcaccggtgagcttgagcgagag
gcagacgaggaggaagaaggagacaaagaagacaactgtgaagtagcatttctgggcacg
agtgaatcagaggtggatgaagagttattgtctgacattgacgacagtgcacaagttgtg
aactttgactgggattctggactagtggacatcgagaagaaactgaacagaggggacaag
atggagatgctgccagacaccacgggcaagggtgccctcatgtttgccaagaggagggag
cgaatggatcaaatcacagcccaaagagaggaggagaggatgggaggagtgccaggcaga
gagccagatgctgcccagacagacagcctgagaaccatggcttcttaccagaggaaggaa
gaagagtctgtgaaagtgcagagctcagtgagcagaagctacatcgaggtgagccatggt
cttggccatgggccccaacagaatggcttcagtggggtgtccgaaacggcagaggcccag
aggacggtccctatgaacagaacagccaaacccttcccggggtctgtgagccagcctgca
gcccccttctccccaacccggaatatgacgagtcccatcgcggacttccctgcgcctcca
ccttattctgcggtcacacctccacctgagggcttccccagagcagtgtcgagtcccaca
gctggcccagcgcagcctcctccgtggccccagcctgccccgtggtcccagccagccttt
tacgattcatctgagcggatagcttcccgggatgaaaggatcgctgtgcctgcaaaaaga
accggaatattgcaggaggccaaaaggaggagcacgacaaaacccatgttcacttttaaa
gagcccaaggtgaacccgaatcctgaactcttgtcacttcttcaaaattcagaaggcaaa
aagggagctggagctggaggcgattccggacccgaagaagactacctcagtttaggagca
gaggcttgtaatttcatgcagagctcctctgccaaacaaaagactccgcctcctgttgct
ccgaaacctgcagtcaagtcctcgtcctcccaaccagtaactccagtttctccggtctgg
tccccaggaatggctccaagccaacctcctgccttccccacgtccaacccatcgcagggc
accgttgtctcctccatcaaaatagcccagccttcctacgctcctgcccggcccacgagt
gctctgaccctggctggtcccttcaaaggaccacaggcagcagtggccagtccgaactac
acaccgaagccaacggctcccgcactgacagtaaacgccgctcatgctggtgcagtggga
ccatccaatgagcttccgggaatgagcgggaaaggagcccagctctttgctaaaaggcag
tcgaggatggagaagtacgtggtggattcagacaccgtgcaggcccatgcggctcgcgcc
cagtctcccactccctctctaccggccggatggaagtactcctccaacgtccgagcacct
cctcctgtggcctacaatcctatccactccccctcctaccctctggccgctgtcaagtct
cagtcatcagccccacaggcctccaagacaagcaagaaaaagggcaaaaaacccctcaat
gctttggacgtcatgaagcaccaaccataccagctaaatgcatccttgtttactttccaa
cctccagatgcaaaggatggcctcctccaaaagtcatccatcaaggtcaattcgatgcca
gccatgaagcaagctcttcccccccggccagtgaatgctggctcgcccactaatgcgcag
gcctcatctgtgtactcagtcccagcatatagctctcagcatcccttctttgcagaggcc
acctcgcccgtcagtgcgtcgccagtgcccgtgggcattcccacctctccaaagcaagaa
tcagcctctacatcttattttgtggcaccaaggccgaagttctcagccaagaaaagtggt
gtcacagttcaggagattggacgctccctttctcttcctggaaggccagtcccacccacc
atctccacaacatctccttggatataccagcctggttatagctactctagcaaaccaact
gatgggctagagaaagcaaacaagagactaactccttgggaagcagcagcaaagtctcct
cttggtctagtggatgatgcctttaagcccagaaacatccaagaatccattgtggcaaat
gtggtctcagcagctcggaggaaggtgctcccagggccctcagatgattggaataagaga
ctgtcctgtgttcctcaagctcagaaggccagtatgggctcattcgcaaggcaagagtat
aatgttgcatccttacctgataataatatgcccaccaactcccaatatggttcacaggtc
tcatatgcatattataggcagccttccagaaatgattctgaaataatgtccatggaaact
aggtcagattactgtctttcaatagctgattacaactacaacccacacccaaggggatgg
agacgctaa
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