Lynx rufus (bobcat): 124521269
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Entry
124521269 CDS
T08475
Name
(RefSeq) collagen alpha-1(XXIII) chain
KO
K24355
collagen type XXIII alpha
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
124521269
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lruf00536
]
124521269
Glycosaminoglycan binding proteins [BR:
lruf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124521269
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
124521269
NCBI-ProteinID:
XP_046948349
LinkDB
All DBs
Position
Unknown
AA seq
566 aa
AA seq
DB search
MSPGQRAGGDARKGGPAGGCVGGGHPATTAGAWAVSALCLLLSVGSAAACLLLGAQAAAL
QGRVAALEEERDLLRRGGPPGDLAAWAEPHLERLLHEKLEGLVKHRTVREAPTECVCPPG
PPGRRGKAGRRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPGDFGPRGDQGQDG
AAGPPGPPGPPGVRGPPGDTGKDGPRGAQGPEGPKGEAGRDGEMGLKGPPGPKGEPGIPG
KKGDDGTPSQPGLPGPPGPKGEPGSVGPPGENGVDGAPGPKGEPGQQGADGATGLRGPPG
LKGEQGDTVVIDYDGRILDALKGPPGPQGPPGPPGIPGAKGELGLPGAPGIDGEKGPKGA
KGDPGEVGPAGPKGEAGEMGLSGLPGADGPKGEKGESASDNLRESLAQIIVEPGPPGPPG
PPGPMGLQGIQGPKGLDGAKGEKGVSGERGPSGLPGPAGPPGLIGLPGTKGEKGRPGEPG
LDGFPGPRGEKGDRSERGEKGERGVPGRKGVKGQKGEPGPPGLDQPCPVGPDGLPVPGCW
HKSMAWPSPGTISTWSWQERGWAGPG
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgggccagcgcgccggcggcgacgcgcgtaagggcggcccggcgggcggctgc
gtcggcggggggcaccccgcgacgacggccggggcctgggcggtgagcgcgctgtgcctg
ctgctctctgtgggctcggctgccgcctgcctgctgctgggcgcccaggcggccgcgctg
cagggccgggtggcggcgctcgaggaggagcgggatctgctgcggcgcggggggccgccg
ggcgacctggccgcctgggccgagccgcacctggagcgcctgctgcacgagaagttggag
ggactggtcaagcaccggacggttcgggaagcgccgaccgagtgtgtctgccccccagga
ccccccggacggcgcggcaaggctggaagaagaggcgaccctggtcctcctgggcaatca
ggacgagatggctacccgggaccactgggtctagatggcaagccgggacttccaggcccc
aaaggggaaaagggtgcaccaggagacttcggcccccggggagaccaagggcaagacgga
gctgctgggcctccggggccccctggaccccctggggtccgaggccctcctggcgacact
gggaaagatggccccaggggagcacaaggcccagagggtcccaaaggagaggctggacga
gacggcgagatgggcctgaagggacccccagggcccaagggtgagcctggcattcctgga
aagaagggagatgacgggacaccaagccagccagggctccctggacccccagggcccaag
ggcgagccagggagtgtggggcctccaggagaaaacggtgtggacggcgccccagggcca
aagggagagcctggccagcaaggtgccgatggagccacagggctgcggggtcccccgggc
ctcaagggcgagcaaggagacacagtggtgattgactacgatggcaggatcttggatgcc
ctgaagggtcctcccgggccacaggggcccccagggccaccagggatccccggagccaag
ggcgagctgggactgcctggtgccccgggaatcgatggagagaagggtcccaaaggagct
aaaggcgacccaggagaggtggggccggccggacccaaaggggaggcaggcgagatgggc
ctgtcaggcctcccgggtgccgacggccccaagggggagaagggagagtcggcatctgac
aacctacgggagagcctggctcagatcatagtggagccagggcccccaggcccccctggt
cccccaggccccatgggccttcagggaatccagggtcccaagggcttggacggagcaaag
ggagagaagggcgtgtcaggggagagaggccccagcggcctgcctgggccagctggcccg
ccgggccttattggactgccaggaaccaaaggagagaagggaagacccggggagccgggc
ctggatggtttccctggaccccgaggagagaaaggtgaccggagcgaacgtggagagaag
ggggagcgaggagtcccgggccggaaaggtgtgaagggccagaagggtgagccgggaccg
ccaggcctggaccagccgtgtcccgtgggccctgatgggctgcccgtgcctggctgctgg
cataagagcatggcctggcccagccctggaacaatcagcacgtggagctggcaggaaagg
ggatgggccggtccagggtaa
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