Lynx rufus (bobcat): 124521687
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Entry
124521687 CDS
T08475
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5 isoform X1
KO
K11125
protein SMG5
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124521687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lruf03019
]
124521687
03032 DNA replication proteins [BR:
lruf03032
]
124521687
Messenger RNA biogenesis [BR:
lruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
124521687
mRNA cycle factors
Common to processing body (P body) and stress granule
124521687
DNA replication proteins [BR:
lruf03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
124521687
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
124521687
NCBI-ProteinID:
XP_046948654
LinkDB
All DBs
Position
Unknown
AA seq
1011 aa
AA seq
DB search
MSQGPPPAESSEPEAKVLHTKRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLR
ELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIG
FYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMACHRCLMYLGD
LSRYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQ
SEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSRKRCKDIKRLLVNFMYLQSLLQP
RSSPVDAELTSLCQSVLEDFNLCLFYLPSSPNLSLASEGEEDYEGGYAFLPDLLIFQMVI
VCLMGVHSLKRAGSKQYSAAIAFTLALFSHLVNHVNIRLQAELEEGENPVPAFQSDGTDE
PLEKEEAPGPEPPPAAPQAGEVRKSRKFSRLSCLRRRRHPPRAGDDSDLSEGFESDSSHD
SARASEGSDSGSDKSLEGGGTAFDAETDSEMNSQESRSDLEDIEDEEGTRSPALEPPRPR
SEAPESLNGPLGPSEASIASNLQAMSTQMFQTKRCFRLAPTFSNLLLQPPAEAPTAASRR
PCVNGDADKPSEPASEDGSESEGSESSGRSCRNERSVQEKLQVLAAEGLLPAVKVFLDWL
RANPELIVVCAQSSQSLWNRLSVLLNLLPAAGELQESGLALCPEVQDLLEGGELPDLPSS
LLLPEDTALRNLPPLRAAHRRFNFDTDRPLLSALEESVVRICCIRSFGHFVARLQGSILQ
FSAEAGIFVSIAQSEQEGVLPQAQAQIRMAQEEARRNRLMRDMAQLRLQLEVSQLEGSLQ
QPKAQSAMSPYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDG
IRYLEAEFKKGNRYIRCQKEVGKSFERHKLKRQDADAWTLYKILDSCKQLTLAQGAGEED
PSGMVTIVTGLPLDDPSALSGPMQAALQAAAHASVDIKNVLDFYKQWKEIG
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaggcccccccccagcggagagcagcgagcccgaggcgaaggtcctccacacc
aagcggctttaccgggctgtggtggaggccgtgcatcgacttgacctcatcctttgcaac
aaaaccgcttatcaagaagtgttcaaaccagagaacattagcctgaggaacaagctgcgt
gagctctgcgtcaagctcatgttcctgcacccggtggactatgggaggaaggctgaggag
ctgctgtggagaaaggtgtactatgaagtcattcagcttatcaagactaacaaaaagcac
atccacagccgcagcaccttggaatgtgcctacaggacacatctggtagccgggattggc
ttctaccagcacctgcttctctacatccagtcccactaccagctggagcttcagtgctgc
atcgactggacccacgtcaccgaccccctcataggatgcaagaagccagtgtctgcctca
gggaaggagatggactgggcacagatggcgtgccaccgatgtctcatgtacctgggggat
ttgtcacggtatcagaatgaattagctggcgtagacaccgagctgctagctgagagattt
tactatcaagccctgtcagtagccccccagattggaatgcccttcaaccagctgggcacg
ctcgcgggcagcaagtactacaacgtggaagctatgtactgctacctccgctgcatccag
tcggaggtgtcctttgagggcgcctatgggaatctcaagcggttgtatgacaaggctgcc
aaaatgtaccaccagctaaagaagtgtgagactcggaaactctcccccagcaggaagcga
tgtaaagacatcaagaggttgctggtgaacttcatgtacctgcaaagcctcctgcagccc
agaagcagcccggtggacgcggagctcacatccctctgccagtcggtcctggaggacttc
aacctgtgcctcttctacctgccctcctcacccaacctcagcctggccagcgagggcgag
gaggactacgagggtggctacgctttcctcccggaccttctcatcttccagatggtcatc
gtctgtctcatgggtgtgcacagcttgaagagagcaggatccaagcagtacagcgcggcc
atcgccttcaccctggccctcttctcccacctcgtcaatcacgtcaacatacggttacag
gctgagctggaggagggcgagaaccccgtgccggcgttccagagtgatggcacagatgag
cccttggagaaggaggaggcgccgggccctgagccccctcccgcggcacctcaagctggc
gaggtcagaaagagccggaagttctcccgcctctcctgcctccgccgccgtcgccatcca
cccagagctggggatgacagtgacctgagtgaaggttttgagtcggactccagccatgac
tcggccagggccagcgagggctcggacagcggctccgacaagagtctggaaggtggggga
acggcctttgatgcggagacagactcggaaatgaacagccaagagtcccgatcagacctg
gaagatattgaggatgaggaggggacacggtccccagccctggagccccctcggcccagg
tcagaggctcccgagtctctcaatggcccactgggccccagcgaggccagcattgccagc
aatctacaagccatgtccacccagatgttccagaccaagcgctgcttccgactggccccc
accttcagcaacctgctcctccagccccctgccgaagcccccaccgcggccagccgcagg
ccctgtgtcaacggagatgcagacaagccctcggagccagcctctgaggacggctccgag
tcggagggcagcgagtccagcgggcgctcctgtcggaacgagcgcagtgtccaggagaag
ctgcaggtgctggcggctgaaggcctgcttcctgcggtcaaggtcttcctggactggctg
cgggccaacccggagctcatcgtcgtgtgtgcgcagagctctcagagcctgtggaatcgc
ctgtctgtgttgctgaacctgttgccagctgccggtgaactccaggagtctggcctggcc
ctgtgtcccgaggtccaggaccttctcgaaggtggtgaactgcctgacctgccctctagc
ctgctgctcccagaggacacggcccttcgtaacctgcctcccctccgggccgcccataga
cgctttaacttcgacacagatcggcccctgctcagcgccttagaagagtcggtcgtgcgc
atctgctgcatccgcagctttggccacttcgtcgcccgcctgcaaggcagcatcctgcag
ttcagcgcggaggccggcatcttcgtcagcatcgcccagtctgagcaggagggcgtgttg
ccacaggcccaggcccagatccgcatggctcaggaggaggcgcgtcggaacaggctgatg
cgggacatggcccagctacgactccagctcgaggtctctcagctagaagggagcctgcag
cagcccaaggcccagtcggcgatgtctccctacctcgtccctgacacccaggccctctgc
caccacctcccggttatccgccagctggccaccagcggccgcttcattgtcatcatcccg
aggacagtgatcgacggcttggatttgctgaagaaggaacacccaggggcccgggatggg
atccgatacctggaggcagagtttaaaaaaggaaacaggtatattcgctgccagaaagag
gtgggaaagagcttcgagaggcacaagctgaagaggcaggatgcggatgcctggaccctc
tataagatcctggacagctgcaaacagctgaccctggcccagggggcaggtgaggaggat
ccgagcggcatggtgaccattgtcacgggcctcccactggatgaccccagtgcgctgtca
ggccctatgcaggcagccctgcaggccgctgcacacgccagtgtggacatcaagaatgtt
ctggatttctacaagcagtggaaggagattggttga
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integrated database retrieval system
