KEGG   Lynx rufus (bobcat): 124522969
Entry
124522969         CDS       T08475                                 
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
  KO
K11649  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lruf  Lynx rufus (bobcat)
Pathway
lruf03082  ATP-dependent chromatin remodeling
lruf04714  Thermogenesis
lruf05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:lruf00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    124522969
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    124522969
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    124522969
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lruf03021]
    124522969
   03036 Chromosome and associated proteins [BR:lruf03036]
    124522969
Transcription machinery [BR:lruf03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     124522969
Chromosome and associated proteins [BR:lruf03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    124522969
   PBAF complex
    124522969
   GBAF(ncBAF) complex
    124522969
SSDB
Motif
Pfam: SWIRM-assoc_2 SWIRM-assoc_3 SWIRM-assoc_1 SWIRM Myb_DNA-binding Myb_DNA-bind_6 HEAT_GCN1 Chromo DUF919 BRCT_2 SpeFL
Other DBs
NCBI-GeneID: 124522969
NCBI-ProteinID: XP_046950634
LinkDB
Position
Unknown
AA seq 1105 aa
MAAAAGGGGLGAAAGAAGAGGAAAAAGLAVYRRKDGGPASKFWESPETVSQLDSVRVWLG
KHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCH
ILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQSNCLTRPSIYLIPDIDLKL
ANKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRKDKQVLVHWGFYPDSY
DTWVHSNDVDAEVEDPPIPEKPWKVHARWILDTDVFNEWMNEEDYEVDENRKPVSFRQRI
STKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQASLYGKRRSQKE
EDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETVTTGG
KEDEDPSKGDQSRSLDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNK
SKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVD
PESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFG
LRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILH
FLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALE
EFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGAEEEK
METDTDVQQPEKAENKGENETDEGDKAQDGENEKHSEKEQDSEVSEDTKSEEKETEENKE
LTDACKERESDLGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLV
ETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQ
QQHGQNPQQAHQHSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGP
GSMIPGQPMPGRMIPTVAANIHPPGSGPAPPGMPPMPGNILGPRVPLTAPNGMYAPPPQQ
PPPPPPPTDGVPPPPAPGPPASAAP
NT seq 3318 nt   +upstreamnt  +downstreamnt
atggccgcggcggcgggcggcggcgggctcggggcggcggcgggcgccgcgggcgcggga
ggcgcggcggcggctgcgggcctggccgtttatcggcggaaggacggtggcccggccagc
aagttttgggaaagcccggagacggtgtcccagctggattcggtgcgggtctggctgggc
aagcactacaagaagtatgttcacgcagatgctcctaccaacaaaacgctggctgggcta
gtggtacagcttctccaattccaggaagatgcctttgggaagcatgtcaccaacccggcc
ttcaccaaacttccggcaaaatgtttcatggatttcaaagctggaggcaccttgtgtcac
attcttggggctgcttacaagtataaaaatgaacagggatggcgtaggtttgatctacag
aatccgtctcgaatggatcgtaacgttgaaatgtttatgaatattgaaaaaacattggtg
cagagcaattgtctgaccagacccagcatctacctcattccagacattgatctgaagttg
gctaacaaattgaaagatatcatcaaacgacatcaggggacatttactgatgagaagtca
aaggcttcccaccacatttatccatatccttcctctcaagaggatgaagaatggttgaga
ccggtgatgagaaaagataagcaggtgttagtgcactgggggttttacccagacagctat
gatacttgggtccatagtaatgatgttgatgcagaagttgaagatcccccaattccggaa
aagccatggaaggttcatgcaagatggattttggatactgatgttttcaatgaatggatg
aatgaggaggattatgaggtggatgagaacaggaagcctgtgagttttcgtcagcgaatt
tcaacaaagaatgaagagccagtcagaagtccagagagaagagataggaaagcatcagct
aatgctcgaaagaggaaacattcgccttctcctccacctccaacacccacagaatcccgg
aagaaaagtggaaagaaaggccaagctagtctttatgggaagcgcagaagtcagaaagag
gaagatgagcaagaagatcttaccaaggacatggaagacccaacaccagtacccaacata
gaggaagtggtacttccaaaaaatgtgaacccaaagaaagatagtgaaaatacacctgtt
aaaggaggaactgtggccgatctagatgagcaggatgaagaaacagtgacaacaggagga
aaggaagacgaagatcctagcaaaggtgatcagagtcgttcacttgacccaggagaagat
aatgtgacagagcagaccaatcacattattattcctagttatgcatcatggtttgattat
aactgtattcacgtgattgaacggcgtgctcttcctgaatttttcaatgggaaaaacaaa
tccaagactccagaaatatacttggcatatcgaaattttatgattgacacatatcgccta
aacccccaagaatatttaaccagcactgcttgtcggcgaaacttgactggagatgtgtgt
gctgtgatgagggttcatgcctttttagagcagtgggggcttgtcaattaccaagtggat
ccagaaagtcgacccatggcaatgggacctcctcctactcctcatttcaatgtattagct
gataccccttctgggcttgtgcctctacatcttcgatcacctcaggtccctgctgctcag
cagatgttaaattttcctgagaagaacaaggaaaaaccaattgatttgcagaactttggt
cttcgtactgacatttactccaagaaaaccttagcaaaaagtaaaggtgctagtgctgga
agagaatggactgaacaggagacccttctgctcctggaggccctggagatgtacaaggat
gattggaacaaagtgtcagagcatgtcggaagtcgtactcaggatgaatgcatcctccac
tttctgaggcttcctattgaggacccgtaccttgagaattcggatgcctccctggggccc
ctggcttaccagcctgtccctttcagtcagtcaggaaacccagtcatgagcactgttgct
tttttggcatctgtggtggaccctcgtgtggcatctgctgcagcaaaagcagctttggag
gagttttctcgggtccgagaggaggtaccactggaattggttgaagctcacgtcaagaaa
gtacaagaagcagctcgagcctctgggaaagtggaccccacgtatggcctggagagcagt
tgcattgcaggcacgggacctgatgagccagagaagcttgaaggggctgaggaggaaaaa
atggaaacagataccgatgttcagcagcctgaaaaggcagaaaacaaaggggaaaacgaa
acagatgaaggtgataaagcacaagatggagaaaatgaaaaacatagtgagaaggagcag
gacagtgaagttagtgaggataccaaatcagaagaaaaggaaactgaagagaacaaggaa
ctcactgatgcttgtaaagaaagagaaagtgatctcgggaagaagaaagtagaacatgaa
atttccgaaggaaatgtggccacggccgcagcagctgctcttgcttcagctgcaaccaaa
gccaagcacctggctgccgtggaagagagaaagatcaagtctctggtggccctgctggtt
gagacacaaatgaagaaattggagatcaaactgcgacattttgaggagctggaaactatc
atggacagagagaaggaggctttagaacaacagaggcagcagttgcttactgaacgccag
aacttccacatggaacagctgaaatacgctgaattgcgagcccgacagcaaatggaacag
cagcagcatgggcagaaccctcagcaggcacaccagcactcaggaggacctggcctggca
ccactcggagcagcggggcaccccggcatgatgcctcatcagcagcctcctccctaccct
ctcatgcaccaccagatgccaccacctcatccaccccagccaggtcagataccaggccca
ggttccatgatccctgggcagcccatgccaggccgcatgattcccaccgttgcagccaac
atccacccgcctgggagtggcccagcccctcccggtatgcctccaatgccaggaaacatc
ttaggaccccgggtacccctcacggcacctaacggcatgtatgcccctccgccgcagcag
ccgccaccgcctccgccgcccacggatggagtccctccgcctcctgctccaggcccacca
gcctcggccgccccctag

DBGET integrated database retrieval system