Lynx rufus (bobcat): 124522969
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Entry
124522969 CDS
T08475
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03082
ATP-dependent chromatin remodeling
lruf04714
Thermogenesis
lruf05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124522969
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
124522969
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
124522969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lruf03021
]
124522969
03036 Chromosome and associated proteins [BR:
lruf03036
]
124522969
Transcription machinery [BR:
lruf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124522969
Chromosome and associated proteins [BR:
lruf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124522969
PBAF complex
124522969
GBAF(ncBAF) complex
124522969
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
DUF919
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
124522969
NCBI-ProteinID:
XP_046950634
LinkDB
All DBs
Position
Unknown
AA seq
1105 aa
AA seq
DB search
MAAAAGGGGLGAAAGAAGAGGAAAAAGLAVYRRKDGGPASKFWESPETVSQLDSVRVWLG
KHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCH
ILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQSNCLTRPSIYLIPDIDLKL
ANKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRKDKQVLVHWGFYPDSY
DTWVHSNDVDAEVEDPPIPEKPWKVHARWILDTDVFNEWMNEEDYEVDENRKPVSFRQRI
STKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQASLYGKRRSQKE
EDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETVTTGG
KEDEDPSKGDQSRSLDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNK
SKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVD
PESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFG
LRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILH
FLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALE
EFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGAEEEK
METDTDVQQPEKAENKGENETDEGDKAQDGENEKHSEKEQDSEVSEDTKSEEKETEENKE
LTDACKERESDLGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLV
ETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQ
QQHGQNPQQAHQHSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGP
GSMIPGQPMPGRMIPTVAANIHPPGSGPAPPGMPPMPGNILGPRVPLTAPNGMYAPPPQQ
PPPPPPPTDGVPPPPAPGPPASAAP
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcggcgggcggcggcgggctcggggcggcggcgggcgccgcgggcgcggga
ggcgcggcggcggctgcgggcctggccgtttatcggcggaaggacggtggcccggccagc
aagttttgggaaagcccggagacggtgtcccagctggattcggtgcgggtctggctgggc
aagcactacaagaagtatgttcacgcagatgctcctaccaacaaaacgctggctgggcta
gtggtacagcttctccaattccaggaagatgcctttgggaagcatgtcaccaacccggcc
ttcaccaaacttccggcaaaatgtttcatggatttcaaagctggaggcaccttgtgtcac
attcttggggctgcttacaagtataaaaatgaacagggatggcgtaggtttgatctacag
aatccgtctcgaatggatcgtaacgttgaaatgtttatgaatattgaaaaaacattggtg
cagagcaattgtctgaccagacccagcatctacctcattccagacattgatctgaagttg
gctaacaaattgaaagatatcatcaaacgacatcaggggacatttactgatgagaagtca
aaggcttcccaccacatttatccatatccttcctctcaagaggatgaagaatggttgaga
ccggtgatgagaaaagataagcaggtgttagtgcactgggggttttacccagacagctat
gatacttgggtccatagtaatgatgttgatgcagaagttgaagatcccccaattccggaa
aagccatggaaggttcatgcaagatggattttggatactgatgttttcaatgaatggatg
aatgaggaggattatgaggtggatgagaacaggaagcctgtgagttttcgtcagcgaatt
tcaacaaagaatgaagagccagtcagaagtccagagagaagagataggaaagcatcagct
aatgctcgaaagaggaaacattcgccttctcctccacctccaacacccacagaatcccgg
aagaaaagtggaaagaaaggccaagctagtctttatgggaagcgcagaagtcagaaagag
gaagatgagcaagaagatcttaccaaggacatggaagacccaacaccagtacccaacata
gaggaagtggtacttccaaaaaatgtgaacccaaagaaagatagtgaaaatacacctgtt
aaaggaggaactgtggccgatctagatgagcaggatgaagaaacagtgacaacaggagga
aaggaagacgaagatcctagcaaaggtgatcagagtcgttcacttgacccaggagaagat
aatgtgacagagcagaccaatcacattattattcctagttatgcatcatggtttgattat
aactgtattcacgtgattgaacggcgtgctcttcctgaatttttcaatgggaaaaacaaa
tccaagactccagaaatatacttggcatatcgaaattttatgattgacacatatcgccta
aacccccaagaatatttaaccagcactgcttgtcggcgaaacttgactggagatgtgtgt
gctgtgatgagggttcatgcctttttagagcagtgggggcttgtcaattaccaagtggat
ccagaaagtcgacccatggcaatgggacctcctcctactcctcatttcaatgtattagct
gataccccttctgggcttgtgcctctacatcttcgatcacctcaggtccctgctgctcag
cagatgttaaattttcctgagaagaacaaggaaaaaccaattgatttgcagaactttggt
cttcgtactgacatttactccaagaaaaccttagcaaaaagtaaaggtgctagtgctgga
agagaatggactgaacaggagacccttctgctcctggaggccctggagatgtacaaggat
gattggaacaaagtgtcagagcatgtcggaagtcgtactcaggatgaatgcatcctccac
tttctgaggcttcctattgaggacccgtaccttgagaattcggatgcctccctggggccc
ctggcttaccagcctgtccctttcagtcagtcaggaaacccagtcatgagcactgttgct
tttttggcatctgtggtggaccctcgtgtggcatctgctgcagcaaaagcagctttggag
gagttttctcgggtccgagaggaggtaccactggaattggttgaagctcacgtcaagaaa
gtacaagaagcagctcgagcctctgggaaagtggaccccacgtatggcctggagagcagt
tgcattgcaggcacgggacctgatgagccagagaagcttgaaggggctgaggaggaaaaa
atggaaacagataccgatgttcagcagcctgaaaaggcagaaaacaaaggggaaaacgaa
acagatgaaggtgataaagcacaagatggagaaaatgaaaaacatagtgagaaggagcag
gacagtgaagttagtgaggataccaaatcagaagaaaaggaaactgaagagaacaaggaa
ctcactgatgcttgtaaagaaagagaaagtgatctcgggaagaagaaagtagaacatgaa
atttccgaaggaaatgtggccacggccgcagcagctgctcttgcttcagctgcaaccaaa
gccaagcacctggctgccgtggaagagagaaagatcaagtctctggtggccctgctggtt
gagacacaaatgaagaaattggagatcaaactgcgacattttgaggagctggaaactatc
atggacagagagaaggaggctttagaacaacagaggcagcagttgcttactgaacgccag
aacttccacatggaacagctgaaatacgctgaattgcgagcccgacagcaaatggaacag
cagcagcatgggcagaaccctcagcaggcacaccagcactcaggaggacctggcctggca
ccactcggagcagcggggcaccccggcatgatgcctcatcagcagcctcctccctaccct
ctcatgcaccaccagatgccaccacctcatccaccccagccaggtcagataccaggccca
ggttccatgatccctgggcagcccatgccaggccgcatgattcccaccgttgcagccaac
atccacccgcctgggagtggcccagcccctcccggtatgcctccaatgccaggaaacatc
ttaggaccccgggtacccctcacggcacctaacggcatgtatgcccctccgccgcagcag
ccgccaccgcctccgccgcccacggatggagtccctccgcctcctgctccaggcccacca
gcctcggccgccccctag
DBGET
integrated database retrieval system
