Lynx rufus (bobcat): 124523044
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Entry
124523044 CDS
T08475
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03013
Nucleocytoplasmic transport
lruf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124523044
03015 mRNA surveillance pathway
124523044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lruf03019
]
124523044
Enzymes [BR:
lruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124523044
5.6.2.5 RNA 5'-3' helicase
124523044
Messenger RNA biogenesis [BR:
lruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124523044
mRNA cycle factors
Common to processing body (P body) and stress granule
124523044
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
124523044
NCBI-ProteinID:
XP_046950750
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPVGAGAGAAAGQLDAQVGGPEGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggcccagttcgcagacgctcaccttcctggacactgaggaa
gccgagctgcttggcgccgacacacagggctcggagttcgagttcaccgacttcaccctc
cccagccagacgcagacgcccccaggtggccccggcggccccggaggaggtggtgcggga
ggcccggtcggcgctggcgcgggcgctgcggccggacagctggacgcgcaggtcggtgga
ccagagggcattctgcagaatggggctgtggatgacaatgtggccaagaccagccagctg
ttggccgagttgaactttgaagaagatgaagaagatacctattacacgaaggatctccct
gtacatgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaatacc
agcaagaagtggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcac
ctcgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagaca
gttctggagtgttacaactgtggctgccgcaatgtcttcctcctcggcttcatccctgcc
aaagcggactcggtagtggtgctcctgtgcaggcagccctgcgccagtcagagcagcctc
aaggacatcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctc
tcttggctggtcaagatcccttctgagcaggagcagctgcgggcccggcagatcactgct
cagcagatcaacaagctggaggagctctggaaggagaatccttctgccaccttggaggat
ctggagaagcccggtgtggatgaggagccgcagcacgtcctcttgcggtatgaggacgcc
taccagtaccagaacatattcggccctctggtcaagctggaggccgactacgataagaaa
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcagggagatgagatatgcctgagatacaaaggg
gatctggcacccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagatcgccattgagcttcggagcagtgtgggcgcccctgtggaggtgactcacaac
ttccaggtggatttcgtgtggaagtcaacctcatttgataggatgcagagcgctttgaaa
acgtttgctgtggatgagacctccgtgtcaggctacatctaccacaaactgctcggccac
gaggtggaggatgtgatcatcaagtgccagctgccgaaacgcttcacggcacaggggctc
ccagacctcaaccactctcaggtttacgctgtgaagactgtgctgcagagaccactgagc
ctgattcaggggccaccgggcacggggaagaccgtgacctctgccaccatcgtctaccac
ctggctcggcagggcaacgggcctgtgctcgtctgtgctccgagtaacatagctgtggat
cagctgactgagaagatccaccagactgggctgaaagtcgtgcggctctgcgcgaagagc
cgtgaggccattgattccccggtgtcattcctggccttgcacaaccagatcaggaacatg
gatagcatgccggagctacagaagctgcagcagctgaaggacgagactggggagctgtcc
tctgctgatgagaagcggtaccgggccctgaagcgcaccgccgagcgggagctgctcatg
aatgcagatgtcatctgctgcacgtgtgtgggtgcaggcgacccgaggctcgccaagatg
cagttccgctccatcttaattgacgagagtacccaggccactgaaccagagtgcatggtc
cctgtggttcttggcgccaagcagctcatcctcgtgggcgaccactgccagctgggccct
gtggtgatgtgcaagaaggccgccaaggctggactgtcccagtcgctcttcgagcgcctc
gtggtgctgggcatccgtcccatccgcctccaggtccagtatcggatgcacccagcgctc
agtgccttcccgtccaacatcttctacgagggctctcttcagaacggcgtcaccgcagcg
gatcgagtgaagaaggggtttgacttccagtggccccagcctgataagccaatgttcttc
tacgtgacccagggccaagaggagatcgccagctcaggcacctcctaccttaacaggacg
gaagctgcaaacgtggagaagatcaccacgaagctgctaaaggcgggtgccaagcctgac
cagatcggcatcatcacgccctatgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccttgcacaccaagctctaccaggaggtggagattgccagtgtggatgcg
ttccagggacgagagaaggacttcatcattctttcctgtgtgcgagccaacgagcaccaa
ggcattgggtttttaaacgaccccaggcggcttaatgtggctctgaccagagcaaggtat
ggggtcattatcgtgggcaacccaaaggccttgtccaagcagccactctggaaccacctg
ctgaactactacaaggagcagaaggtgctggtggaggggcccttgaacaaccttcgggag
agcctcatgcagttcagcaagcccaggaagctggtcaacaccatcaacccgggagctcgc
ttcatgacaacagccatgtatgatgctcgggaggccattatcccaggatcagtctatgat
cggagcagccagggccggccctcaaacatgtacttccagacccacgaccagatcggcatg
atcagtgcgggacccagccacgtggctgccatgaacattcccatccctttcaacctggtc
atgccgcccatgccaccaccagggtattttggacaagccaacgggccagccgcaggccgg
ggtaccccaaaaggcaagactggtcgtggggggcgccagaagaaccgctttgggctccct
ggacccagccagacgaatctccccaacagccaggccagccaggatgtggcatcacagccc
ttctcccagggcgccctgacacagggctacatctccatgagccagccctcccagatgagc
cagcccggcctctcccagcccgagctgtcccaggacagttaccttggtgatgagtttaag
tcacagattgatgtggcgctgtcgcaagactccacgtaccaaggggagcgggcgtaccag
cacggcggagtgacagggctgtcccagtactag
DBGET
integrated database retrieval system
