Lynx rufus (bobcat): 124526130
Help
Entry
124526130 CDS
T08475
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124526130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lruf03019
]
124526130
03012 Translation factors [BR:
lruf03012
]
124526130
Enzymes [BR:
lruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124526130
Messenger RNA biogenesis [BR:
lruf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124526130
Translation factors [BR:
lruf03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124526130
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
HA2_C
Helicase_C
HA2_N
AAA_22
AAA_19
nSTAND3
PhoH
AAA_14
ATPase
DUF6782
NPHP3_N
AAA_23
ResIII
AAA_34
NACHT
Motif
Other DBs
NCBI-GeneID:
124526130
NCBI-ProteinID:
XP_046954844
LinkDB
All DBs
Position
Unknown
AA seq
1014 aa
AA seq
DB search
MSYDYHQSWGRDGGPRSSGGGYGGSYGGGHGGGHGGNRGSGGGGGGGGGGGGGRGGRGRH
PGHLKGREIGLWYAKKQGQKNKEAERQERAVVHMDERREEQIVQLLHSVQAKNDKDSEAQ
ISWFAPEDHGYGTEAPAESKPNSEKKLEDQEKKLINQEKRTFRIRDKYIDRDSEYLLQEN
EPDVTLDQHLLEDLQKKKSDPRYIEMQHFREKLPSYGMQKELVNMIDNHQVTVISGETGC
GKTTQVTQFILDNYIERGKGSACRIVCTQPRRISAISVAERVAAERAESCGNGNSTGYQI
RLQSRLPRKQGSILYCTTGIILQWLQSDSRLSSVSHIVLDEIHERNLQSDVLMTVIKDLL
NFRPDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVAEYLLEDIIEKIRYVPEQKEH
RSQFKRGFMQGHVNRQEKEEKEAIYKERWPDYVRELRKRYSASTVDVLEMIDDDKVDLNL
IAALIRHIVLEEEDGAILVFLPGWDNISTLHDLLMSQVMFKSDRFIIIPLHSLMPTVNQT
QVFKRTPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMSAEWVSKA
NAKQRKGRAGRVQPGHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGGIAYF
LSRLMDPPSDEAVSLSIKHLMELNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCC
LDPVLTIAASLSFKDPFVIPLGKEKIADARRKELAKDTKSDHLTVVNAFEGWEDARRRGF
RYEKDYCWEYFLSSNTLQMLHNMKGQFAEHLLGAGFVSSRNPKDPKSNINSDNEKIIKAV
ICAGLYPKVAKIRLNLGKKRKMVKVYTKTDGLVAIHPKSVNVEQTEFHYNWLIYHLKMRT
SSIYLYDCTEVSPYCLLFFGGDISIQKDNDQETIAVDEWIVFQSPARIAHLVKELRKELD
ILLQEKIESPHPVDWKDTKSRDCAVLSAIIDLIKTQEKASPRNFPPRFQDGYYS
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgagctatgactaccatcagagctggggccgcgatggcgggccccgcagctccggcggg
ggctatgggggaagctatggagggggccatggagggggccatggagggaaccgaggctct
ggaggcggcggcggcggcggcggcggaggaggaggtggtcgaggcggccgaggccgacat
cccgggcacctgaaaggccgcgagattggcttgtggtatgcgaagaaacagggtcagaag
aacaaggaagcggagaggcaggagagagctgtagtacacatggatgaacgtcgagaagaa
caaattgtgcagctgctgcattcagtccaagctaagaatgataaagattcggaagcacag
atatcctggtttgctcctgaagatcacggttacgggactgaagctcctgctgagagcaaa
ccaaactcagagaaaaaacttgaggaccaggaaaagaaattgataaatcaagaaaagagg
acatttagaatcagggacaaatatattgaccgagattctgagtatctcttgcaagaaaat
gaacctgatgtaaccttagaccaacatctattggaagatttacaaaagaaaaaaagtgac
cctcggtatattgaaatgcagcatttcagggaaaagctgccttcatatggaatgcaaaag
gaattggtgaatatgattgataaccatcaagtaacagtaataagtggtgaaactggttgt
ggaaaaactactcaagttactcagttcattttggataactacattgaaagaggaaaagga
tctgcatgcaggatagtttgtactcagccaagaagaattagtgccatttcggttgcagag
agagtggccgcagaaagggccgaatcttgtggcaatggtaatagtaccggataccagatt
cgtctccagagtcggttgccaaggaagcagggttctatcttatactgtacaacaggaatt
atcctccagtggctgcagtcagactcgcgtttgtccagtgttagtcatattgtgcttgat
gaaatccatgagagaaacctacagtcagatgttttaatgactgttattaaagatcttctc
aattttcgacctgacctgaaagtcatattaatgagtgcgacattgaatgctgagaaattt
tcagaatattttggtaactgtccaatgatacacatacctggttttacttttccggttgcg
gagtatcttttggaagatataattgaaaaaataagatatgttccagaacaaaaagaacac
aggtcccagtttaagaggggtttcatgcaagggcatgtaaacagacaagaaaaagaagaa
aaagaagcaatctataaagaacgctggccagattatgtaagggaactgcgaaaaaggtat
tctgcaagtactgtagatgttctggaaatgattgatgatgataaagttgatctgaatttg
attgctgcccttatccgacacattgttttggaagaagaggatggtgcgatactggtcttc
ctaccaggctgggacaatatcagcactttacatgatctcttgatgtcacaagtgatgttt
aaatcagacaggtttattattatacccttacattcactgatgcctacggttaaccagaca
caggtatttaaaagaactcctcctggtgttcggaaaatagtaattgctaccaatattgca
gagactagcattaccatagatgatgtagtttatgtaatagatggaggaaaaataaaagag
acacactttgacacacaaaacaacatcagtaccatgtctgctgagtgggttagtaaagct
aatgccaaacaaaggaaaggtcgagctggaagagtgcagcctggtcattgctatcatcta
tataatggtcttagagcaagccttctggatgactatcaactgccagaaattttgagaact
cctctggaagagctttgtttacaaataaagattttaaggctaggtggaattgcttatttt
ctgagtaggttaatggatccaccatcagatgaagcagtgtcactctccataaaacacctg
atggaactgaatgctttggataaacaagaagaattgacaccccttggagtccacttagca
cgattaccagttgagccacacattggaaaaatgattctttttggagctcttttctgttgt
ttagacccagtactcaccattgctgctagtctcagcttcaaagatccctttgtcattcca
ttgggcaaagaaaagattgcagatgcaagaagaaaagaattggcaaaagataccaaaagt
gaccatctgacagttgtgaatgcatttgagggctgggaagatgctagacgacgtggtttc
agatatgaaaaagactattgctgggaatattttttgtcttcaaacacattgcagatgctg
cataacatgaaaggacagtttgctgagcatcttcttggagctggatttgtaagcagtaga
aatcctaaagatccaaaatctaatataaattcagataatgagaagataattaaagctgtc
atctgtgctggtttatatcctaaagttgctaaaatccgactaaatttgggtaaaaaaaga
aaaatggtcaaagtttacacaaaaactgatggactagttgctattcatcctaaatctgtt
aatgtggagcaaacagaatttcactacaactggcttatctatcacctgaagatgagaaca
agtagtatatacttgtatgactgcacagaggtttccccatactgtctcttgttctttgga
ggtgatatttccatccagaaggataatgatcaggaaactattgccgtagatgaatggatt
gtctttcagtctccagcaagaattgcccatcttgttaaggaattaagaaaagaactagat
atccttctgcaagagaagatcgaaagtccccatccggtagattggaaggacactaaatcc
agagactgtgcagtactgtcagctattatagacttgattaaaacacaggaaaaagcaagt
cccaggaactttccaccacgattccaggatggatattacagctga
DBGET
integrated database retrieval system
