KEGG   Lynx rufus (bobcat): 124526471
Entry
124526471         CDS       T08475                                 
Name
(RefSeq) helicase-like transcription factor isoform X1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
lruf  Lynx rufus (bobcat)
Brite
KEGG Orthology (KO) [BR:lruf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lruf04121]
    124526471
   03400 DNA repair and recombination proteins [BR:lruf03400]
    124526471
Enzymes [BR:lruf01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     124526471
Ubiquitin system [BR:lruf04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    124526471
DNA repair and recombination proteins [BR:lruf03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    124526471
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_2 zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX zf-RING_2 DEAD RING_XB3-XBAT31 zf-RING_5 zf-C3HC4_4 HDA2-3 zf-ANAPC11 zf-Nse zf-rbx1 Prok-RING_4
Other DBs
NCBI-GeneID: 124526471
NCBI-ProteinID: XP_046955451
LinkDB
Position
Unknown
AA seq 1010 aa
MSWMFKRDPVWKYLQTVQYGAHGNFPRLSYPTFFPRFEFQDIIPPDDFLTSDEELDSVLF
GTLRGHVVGLRYYTGVVNNNEMVALQREPNNPYDKNAVKVNNVNGNQVGHLKKDLAAALA
YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVLDQLKKHGFKLGPAPKTLGF
SLESSWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAVETPL
LPHQKQALAWMVSRENSKDLPPFWEQRSDFYYNTITNFSEKDRPENVHGGILADDMGLGK
TLTAIAVILTNFHDGKPLPVERIKKSQLKKECNVNDQTMKLGGNTSEKADGLIKGSRCSG
EPSISDVKGKNKYPKSELSSSRPKRRKTVVQYIESSDSEEIETNELPQKMKGKLKNSQSE
TKRVKAGSSKVKEDAEFACALISSTPATKRRMLKKGASAVESSKKTDVEERPRTTLIICP
LSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIRDPALLSKQDIVLTTYNILTHDYGTKGD
SPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFL
KLKPFLDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPERKV
FIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLT
NAVSSSGPSAFSLGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVF
CKPCICQVIQNEQPHAKCPLCRNDIHGDNLLECPPEELACDTEKKSNMEWTSSSKINALM
HALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQCFQN
TEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITK
FIVKDSVEENMLKIQNTKRELAAGAFGTKKTNANEMKQAKINEIRTLIDL
NT seq 3033 nt   +upstreamnt  +downstreamnt
atgtcctggatgttcaagagagatcctgtttggaagtacttgcagactgtccaatacgga
gcccatggaaattttccacgcctctcatatccaactttctttccccgttttgaattccaa
gatattatacctccagacgatttcctaactagtgatgaagagctagattcagttttattt
ggaactttgagaggtcatgtagttggactacgctattacacaggagtagttaataataat
gaaatggttgcattacaacgggaacccaataacccctatgataagaatgcagttaaagta
aacaatgtgaatggaaatcaggttggccatttaaagaaagatctagcagctgctttggcc
tatatcatggacaacaaattggcacaaattgaaggggtcgttccttttggtgcaaacaat
gcttttaccatgcctctccatatgactttttggggaaaagaagaaaataggaaagcggtt
ttagatcagttaaagaaacatggatttaaattgggtcctgcaccaaaaactttaggattc
agtttagaaagtagttggggctctggaagagctggaccaagctatagtatgccagttcat
gctgcagtacagatgacaactgaacagcttaaaacagaatttgacaaattgtttgaagat
ttaaaagaagatgataaaactcatgaaatggagccagctgaggctgttgaaacaccattg
cttccacatcaaaaacaagctctagcttggatggtttcacgggaaaacagtaaagacctt
ccaccgttttgggaacagcgaagtgacttctactacaacacaataacaaatttttctgag
aaggatcgaccagaaaatgtccatggaggaattttagctgatgatatgggtttgggcaaa
actttgacagccattgcagtaattcttaccaacttccatgatggcaaacctcttcctgtt
gagagaattaaaaaaagtcaactgaagaaggagtgtaatgttaacgatcaaactatgaaa
cttggaggaaataccagtgaaaaggcagatggactaatcaaaggatctagatgtagtgga
gaacccagtatttcagatgtcaagggaaagaataaatatcccaagtcagaattgtctagc
tcccgccccaaaagaagaaaaactgttgtccagtatattgaaagcagtgattcagaagaa
attgaaacaaatgaattgccacagaaaatgaaaggcaaactgaaaaattcacagtctgag
actaaaagagtaaaagcaggatcttctaaggttaaagaagatgcagaatttgcatgtgca
cttatttcatctacccctgcaacaaaaaggagaatgttgaaaaaaggagcatctgcagta
gagagttcaaagaaaactgatgttgaagagagaccaagaacaacactgatcatctgtcca
ctttctgtgttaagcaactggattgatcaatttggacaacatataaaatcagatgtgcac
ttgaatttttatgtttattatggtcctgaccgtataagagacccagccttgctttcaaaa
caagatattgttttgactacatacaacattttaactcatgactacggaactaaaggtgat
agtccattacatagcataaggtggctaagagtgatcctggatgaaggacatgcgataaga
aatccaaatgctcagcagacaaaagctgtacttgatttagaagcagagagaagatgggta
ttaacaggtactccgattcagaattctttgaaggatttgtggtctcttctttccttttta
aaacttaagccatttcttgatagagaatggtggcatagaacaatacagcgtcctgtcaca
atgggagatgaagggggacttaggcgtttacaatccctaattaaaaatattactcttaga
agaacaaaaaccagcaaaattaaaggaaaacctgttttggagttaccagaacgtaaagta
tttattcagcacattacactttcagatgaagagagaaaaatttatcagtctgtaaaaaat
gaaggcagagctactattggaaggtattttaatgaagggactgtccttgcacactatgca
gatgtcctgggtcttttgcttagattgcggcagatttgttgtcatactcatcttcttacg
aatgcagtgtcttccagtggtccctcagccttttctctaggaaatgatacacctgaagaa
ctacgaaagaagttaataaggaagatgaagttaattctgagctcaggttctgatgaagaa
tgtgcaatttgcttggattctttaacggttcctgtcataacacattgtgcacatgtcttt
tgtaagccctgtatttgccaagtcattcagaacgagcagccacatgctaaatgtccttta
tgcagaaatgatatacatggagacaatttattagaatgtcctccagaagaattggcatgt
gacactgaaaaaaagtctaatatggaatggacatccagttcaaagattaatgcactaatg
catgcattgattgacttaagaaagaagaaccccaacataaaaagtttagttgtttctcag
tttacaacattcctgtctttaatagaaacaccactcagagcctctggatttgtgtttact
cgtttggatggttctatggcacagaagaaaagagttgaatcaattcagtgttttcaaaac
actgaagcaggatctccaactataatgcttctatctttgaaagcaggtggagttggttta
aatctttctgcagcttctcgcgtgtttttaatggatccagcctggaatccagctgctgaa
gatcagtgctttgacagatgccatagacttggccagaagcaagaagttatcatcacaaaa
ttcattgtgaaggattctgttgaagaaaatatgctgaaaatacaaaacacaaagagagaa
cttgctgctggagcctttggaactaaaaaaacaaatgctaatgaaatgaaacaagctaaa
attaatgagatcagaactttaattgatttataa

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