Lynx rufus (bobcat): 124528089
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Entry
124528089 CDS
T08475
Name
(RefSeq) LOW QUALITY PROTEIN: helicase SKI2W-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124528089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lruf03019
]
124528089
Enzymes [BR:
lruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124528089
Messenger RNA biogenesis [BR:
lruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124528089
mRNA degradation factors
3'-5' decay
Ski complex
124528089
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
HAS-barrel
DUF3516
Motif
Other DBs
NCBI-GeneID:
124528089
NCBI-ProteinID:
XP_046957401
LinkDB
All DBs
Position
Unknown
AA seq
1246 aa
AA seq
DB search
MMETERLVLPPPDPLDLPLRPVELGCTGHWELLNVPGAPESTLPHGLPPCAPDLQQETEQ
LFLSSPAWLPLHGVEHSARKWQRKMDPWSLLATLGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPVSQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPKDHPAPAPGLLSLSRLLEPLDLGGGDEDESETVGQPGIPRGD
TVSAPPCSASLARASSLEDLVLKEASTAESPPEPPKPLPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKRLGTLEEPDTTGQLVDLPEYYSWGEELTETRSLIQRRIMESVNGLKSLS
AGRVVVVKNQEYHNTLGVILQVSSNSTSRVFTTLILCDKPVSEDPQERAPATPDVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDMAAITTKVLRVNGEKILEDFSKRQQPKFKKDPPIAA
VTTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIWGAQCVHSPRF
SAQYLKLQERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGEQLPSTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacggagcgacttgtgctgcctcctccagatcccttggatctgccccttcgg
cctgtggagctgggatgcacagggcactgggagctgctgaatgtgcctggggctccagag
agcacacttccccacggcctccctccctgtgcccccgatctgcagcaggaaacagagcag
ttgtttttatcatctccagcctggttgcctctgcatggtgtggagcactcagcccgaaaa
tggcagaggaagatggatccctggtccctcctggccacactgggggcccctgtcccctca
gaccttcaggcccaaagacacccaaccacaggccagatactgggctacaaagaggtcctg
ctggagaatacaaacctatcggccaccacctccttgtctcttcgccggcccccagggccc
gtctcccagtccctgtgggggaatccaacacaataccctttctggccaggtggaatggat
gagcctaccataacagatctgagcactcgggaggaggctgaggaagagatagactttgag
aaagatcttcttactgtcccacctggcttcaagaaaggtgtggactttgcaccgaaggat
cacccggctccagctcccggcttgctcagcctcagccgtttgctggaacctctggatttg
ggggggggcgatgaggatgagagtgagacagtgggccagccaggaattcccagaggagac
actgtttcagcacccccctgcagtgcttccctggcccgagcaagcagcttggaggaccta
gtgttgaaggaagcatccacagctgaatcccccccagagccccccaaacccctgcctcag
gagcagtgggctattcctgtggatgtcacctcccctgttggtgatttctaccgcctcatt
ccccagcctgctttccagtgggcatttgagccggatgtgtttcagaaacaggccatcttg
cacttggagcggcatgactctgtctttgtagcagctcacacatctgcggggaagacggtt
gtggctgaatatgccattgcccttgcccagaaacacatgacacgcaccatctacacttcg
cccatcaaggccctgagcaaccagaagttccgagactttcgaaacactttcggagatgtg
gggctgctcactggggacgtacagctgcacccggaggcctcctgcctcattatgacgaca
gagatccttcgctccatgctgtacagcggttcagatgtcatccgggacctagagtgggtc
atctttgatgaggttcactacatcaacgatgctgagcgtggggttgtgtgggaggaagtg
cttatcatgctccctgaccatgtctccatcatccttctgagtgctaccgtccccaatgcc
cttgagttcgctgactggatcgggcgactgaaacggcgccagatctatgtgatcagcact
gttgcccgtcctgtacccctggagcattatctcttcacggggaacagccccaagacccag
ggggagctctttctgttgctggactcccgaggtgccttccacacaaaggggtactatgca
gctgtggaggccaagaaggagcggatgagcaaacatgcccagacctttggggccaaacag
cccacgcatcagggggggcctgcacaggaccgcggtgtgtacctatccctcctggcctcc
ctccgcacccgtgcgcagctgcctgtggtcgtgttcaccttctcgcggggtcgctgtgat
gagcaagcctcgggcctcacctccctggacctcaccacaagttcagagaagagtgaaatt
cacctcttcctgcagcgctgccttgctcgcctccgtggctctgaccgccagctgccccag
gtcctgcacatgtctgagctcctgcaccgtggcctgggtgtgcaccacagtggcatcctg
cccattcttaaggagatcgtggagatgcttttcagtcgaggcctggtcaaggtcttgttt
gccacggagacctttgccatgggtgttaatatgcctgctcgaacagtggtgtttgactct
atgcggaaacacgatggctccaccttccgggatctgctacctggagagtatgtgcagatg
gcaggtcgggcaggccggaggggcctggaccccaccggcactgtcatcctgctctgcaag
ggccgtgtgcctgagatggcagacctgcaccgcatgatgatgggaaagccatcgcagctg
caatctcagttccgcctcacatacaccatgatcctgaacctgctgcgggtggacgccctc
agggtggaagacatgatgaagaggagcttctccgagtttccatcccgcaaggacagcaag
gcccatgaacaggctctagctgaactgaccaagagactagggaccttagaggaacctgat
acgactggccaactggttgacctgcctgagtattacagctggggggaggaactgacagag
acccggagcctgatccagcgacgcatcatggagtctgtgaatgggctgaaatctctctca
gcaggaagggtggtggttgtgaagaatcaggagtatcataacacattgggtgttatcctg
caggtctcctcaaattccaccagcagggtgtttacaaccctgatcttgtgtgataagcct
gtgtctgaggacccacaggagagggcaccagccaccccagatgtgccctacccagatgac
cttgtgggattcaagctgttcctgcctgaagggccctgtgaccacacagtggccaagctc
cagccaggagacatggctgccatcaccaccaaggtgctccgggtgaatggggagaagatc
ttggaggacttcagcaagaggcagcaaccaaaattcaagaaggatcctcccattgcggct
gtgaccactgctgtccaggaactgctgcgtttggctcaggcctacccagcgggaccccct
acccttgaccctgtcaatgacctgcagctcaaggatgtgtcagtggttgagggagggctc
cgggcccggaagctggaggagctgatctggggggctcagtgtgtgcacagtccccgtttc
tctgcccagtacctgaagctgcaggagcgaatgcagatacagaaggagatggagcgacta
cgtttcctgctgtcagatcagtcactgttgctgctcccagagtatcaccagcgagtagag
gtgctccgaaccctgggttatgtagacgaggcaggtaccgtgaagctggcagggcgggtg
gcttgtgccatgagcagtcacgagctgcttctcactgagctcatgtttgacaacgctctg
agtgccctgcggccagaagagattgcagccctgctctctggcctggtctgccagagccct
ggggaccctggggagcagctcccaagcaccctcaaacagggagtggaacgtgtccgggct
gtggccaagcggattggtgaggtccaggtggcctgtggcctgaaccagactgtggaggaa
tttgtcggggagctgaattttgggctggtagaggtggtgtacgagtgggcccggggcatg
cccttctctgagttggcagggctgtcggggactcctgagggcctggtggtccgttgcatc
cagcgcttggccgagatgtgtcgctcgctgaggggggcggcccgcctggtaggagaacct
gtgctaggtgccaagatggagacggcagctactttgctgcggagggacatcgtctttgca
gccagcctatacactcagtga
DBGET
integrated database retrieval system
