Lynx rufus (bobcat): 124528151
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Entry
124528151 CDS
T08475
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
124528151
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lruf01009
]
124528151
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lruf04515
]
124528151
Protein phosphatases and associated proteins [BR:
lruf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124528151
Cell adhesion molecules [BR:
lruf04515
]
Cadherins
Protocadherins
124528151
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
124528151
NCBI-ProteinID:
XP_046957546
LinkDB
All DBs
Position
Unknown
AA seq
1237 aa
AA seq
DB search
MDSRAGGRRCPEAVLLILEPARMGPLRPSPGPGRQRLLLPPLLLTLLLLLAASPGHATRV
VYKVLEEQPPNTLIGSLAADYGFPDMGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGL
RECQNQLPGEPCILEFEVSITDLAQNGSPRLLEGQIEVQDINDNTPNFASPVITLPIPEN
TNIGSLFPIPVASDRDTGPNGVASYELQAGPEAQELFGLQVAEDQEGKQPQLIVMGNLDR
ERWDSYDLTIKVQDGGSPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVI
QVKANDSDQGANAEIDYTFHQAPEVVRRLLRLDRNTGLITVQGPVDREDVSTLRFSVLAK
DRGTNPKSARAQVVVTVKDMNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVS
DRDEGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVD
SGNPPLSSTNSLKVQVVDVNDNAPVFTQSVTEVAFPENNKPGEVVTEVTASDADSGSNAE
LVYSLEPEPAAKGLFTISPETGEIRVKTSLDREQRDSYELKVVAADRGSPSLQGTATVLV
NVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENARVQLTVEQDNGDFVI
QNGTGTILSSLSFDREQQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSN
TSHRLLTPQTRLGETVSQVTAEDIDSGVNAELTYSIAGGNPYGLFQIGSHSGAITLEKEI
ERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAG
DPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPK
PSSKASKGNKSKGKKSKSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPP
GSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDY
SYRTNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLG
PLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTQECSEFGHSDTCWMPGQSS
PSRRTKSSALKLSTFVPYQDRGGQEPVGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHD
SCKDSATLEEIPLTQTSDFPPAATPASAQTAKREIYL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggacagcagggccggcggccggcggtgccccgaggcggtcctcctgattctagagcct
gccaggatggggcccctgaggcctagcccaggccctgggcggcaacggttgctgctgcct
cccttgttactgacactgctgcttctgctggccgcatccccaggccatgccactcgggtg
gtgtacaaggtgctggaggaacagccacccaacaccctcattgggagcctcgcagctgac
tacggttttccagatatgggccacctgtacaaactagaggtaggcgccccgtacctgcgg
gtggatggcaagacgggagacatcttcaccacggagacctctatcgaccgcgaggggctc
cgtgaatgccagaaccagctccccggtgagccctgcatcctggagtttgaggtgtctatt
acagacctcgcgcagaatggcagtccccggctgttagagggccagatagaggtacaggac
atcaatgacaacacgcccaacttcgcctcgccagtcatcacgttacccatccctgagaac
accaacatcggctcactcttccccatcccggtggcttctgaccgcgatactggccccaac
ggtgtggcgtcctatgagctgcaggccgggcccgaggcccaggagctatttgggcttcag
gtggcagaggaccaggaggggaagcagccacagctcatcgtgatgggcaacctggaccgg
gagcgctgggattcctatgacctcaccatcaaggtgcaggatggtggcagccccccacgt
gccagcagtgccctgcttcgagtcactgtgcttgacaccaatgacaacgcccccaagttc
gagcggccctcctatgaggctgagctgtctgagaacagccccataggccactcagtcatc
caggtgaaagccaatgactcggaccaaggtgccaatgcggagattgactacacattccac
caggcgcctgaagtggtgaggcgtcttctgcgactggacaggaacactggacttattact
gtgcagggccccgtggatcgtgaagatgtaagtaccctgcgcttctcagtgctcgccaag
gaccgaggcaccaaccccaagagtgcccgtgcccaagtggtggtgactgtgaaggacatg
aacgacaatgcccccaccattgagatccggggcatagggttggtgacccatcaagatggg
atggcgaacatctcagaagatgtggcagaggagacagctgtagccctggtacaggtatct
gaccgagatgagggagagaatgcagctgtcacctgtgtggtggcaggtgacgtgcccttc
cagctacgccaggccagtgagacgggaagtgacagcaaaaagaagtacttcctgcagacc
accaccccactcgactacgagaaggtcaaagactacaccatagagattgtggccgtggac
tctggcaaccccccactctctagtaccaactccctcaaggtacaggtggtagacgtcaat
gacaatgcacctgtcttcacccagagcgtcactgaggttgccttcccagaaaacaacaag
ccaggtgaagtggtcaccgaagtcactgccagtgatgctgactcgggctctaatgctgag
ctggtttactctctggagcccgagccagccgccaagggcctcttcaccatctcacctgag
actggagagatccgggtgaagacatcccttgatcgggaacagcgggacagttatgagtta
aaggtggtggcagccgaccggggcagccccagcctgcagggcacagccaccgtcctcgtc
aacgtgctggactgcaatgacaatgaccccaagtttatgctgagtggctacaacttctca
gtgatggagaacatgccggcactgagtccagtgggcatggtgaccgtcattgatggggat
aagggggagaatgcccgggtacagctcacagtggagcaggacaatggtgactttgttatt
cagaatggcacaggcacgattctctccagcctgagctttgatcgggaacagcaaagcacc
tatacattccagctgaaggcagtggatggcggtgtcccacctcgctcagcttatgttggt
gtcaccatcaacgtgctggatgagaatgacaatgcgccttttatcaccgccccttccaac
acctcccaccggctgttgaccccccagacccgtcttggtgagacggtcagccaggtgaca
gctgaggacattgactctggtgtcaatgctgagttgacctatagcattgctggtggcaac
ccttacggtctcttccagatcgggtcacattcaggtgccatcaccctcgagaaggagatt
gagcggcgccaccacgggctgcaccgcctagtggtaaaggtcagtgaccgtggcaagccc
ccacgctatggcacagccttggtccacctttatgtcaacgagaccctggccaaccgcacc
ctgctagagaccctgctgggccacagcctggacacgccactggacatcgacattgctggg
gatccggaatacgagcgctccaagcagcgtggcaacatcctctttggtgtggtggctggt
gttgtggctgtggccttgctcattgccctggcagtgctcgtgcgctactgccggcagcgg
gaagccaagagtggctaccaggccggtaagaaggagaccaaggacctgtatgcccccaag
cccagcagcaaagcctccaagggaaacaaaagcaagggcaagaagagcaagtccccaaag
cctgtgaagccagtggaagatgaggacgaggccgggctgcagaaatctctcaagttcaac
ctgatgagcgacgcccctggggacagcccccgcatccacctgcccctcaactatccaccg
ggcagccctgacctgggccgccactaccgctctaactccccactgccttccatccagctg
cagccccagtcaccctcggcctccaagaagcaccaggtggtgcaggacctgccacccgca
aacacattcgtgggcacaggtgacaccacgtccacaggctctgagcagtactccgactac
agctaccgcaccaacccccccaaataccccagcaagcagttacctcaccgccgcgtcaca
ttctccgccaccagtcaggcccaggagctgcaggacccgtcccagcacagttactatgac
agtggcctggaggagtctgagacgccgtccagcaagtcgtcctcgggaccccggctcggc
cccctggccctgcccgaggaccactacgagcgcacgacgcccgatggcagcataggagag
atggagcaccctgagaacgacctgcgccctttgcctgatgttgccatgacaggcacatgt
acccaggagtgcagcgagtttggccactccgacacgtgctggatgcctggccagtcgtct
cccagccgccggaccaagagcagcgccctcaaactctccaccttcgtgccttaccaggac
cgaggagggcaggagcctgtgggcgccggcagccccagccccccggaagaccggaacacc
aaaacggcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccatgat
tcctgcaaggactcggccaccttggaggaaatccccctgacccagacctcggacttccca
cctgcagccacaccggcatctgcccagacagccaagcgtgagatctacctgtga
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