Lynx rufus (bobcat): 124528521
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Entry
124528521 CDS
T08475
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03082
ATP-dependent chromatin remodeling
lruf04714
Thermogenesis
lruf05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124528521
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
124528521
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
124528521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lruf03000
]
124528521
03021 Transcription machinery [BR:
lruf03021
]
124528521
03036 Chromosome and associated proteins [BR:
lruf03036
]
124528521
Transcription factors [BR:
lruf03000
]
Eukaryotic type
Helix-turn-helix
ARID
124528521
Transcription machinery [BR:
lruf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124528521
Chromosome and associated proteins [BR:
lruf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124528521
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
124528521
NCBI-ProteinID:
XP_046958109
LinkDB
All DBs
Position
Unknown
AA seq
2444 aa
AA seq
DB search
MAARAAAAAAAAARARAGSGERRAPPGPRPAPGARDLEAGARGAAAAAPGPMLGGGGDGG
GLNNVHHHPLHPRHELNMAHNASTAAAAASTNSAKSGGSEAALKEGGSAAALSSSSSAAA
AAAAASSSSSSSGPGSAMETGLLPNHKLKTVGEAPAAPPHQQHHHHHHAHHHHHHAHHLH
HHHHALQQQLNQFQQQQQQQQQQQQQQQQQQQHPISNNSLGGAGGGAAQPGPDMEQPQHG
GAKDSAAGSQADPPGQPLLSKPGDEDDAPPKMGEPAGGRFEHPGLGALGAQQPPVAVPGG
GGGGGGGGGPAAVSEFNNYYGSAAPASGGPGGRTGPCFDQHGGQQSPGMGMMHSASAAAG
APNSMDPLQNSHEGYPNSQYNHYPGYSRPSAGGGGGGGGGGGGGGGGGGGGGGGGGSGGG
GGGGGAGAGAVAAAAAAAAAAAGGGGGGYGGSSSGYGVLSSPRQQGGGMMMGPGGGGAAS
LSKAAAGAAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPDYSSPSAPPPP
PPSQPQSQAAAAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGT
PGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGPPGPQRYPISIQGR
TPGAMGGMQYPQQQMPPQYGQQGVSGYCQQGQQPYYNQQPQPPHLTPQAQYLPPQPQQRY
QPQQDMSQEGYGTRSQPPLAPGKPNHEDLNLIQQERPSSLPVEVLTSEDTAFGLKDLSGS
IDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPV
GSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMSQ
YGPQQTGPSMSPHPSPGGQMHPGISSFQQSNSSGTYGPQMSQYGPQGNYSRPPTYSGVPS
ASYSGPGPGMGINANNQMHGQGPSQPCGAMPLGRMPSAGMQNRPFPGNMSSMTPSSPGMS
QQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRPPYIRSPAYPSQSGAGGRPMFSSQ
HPNYGNSQAPMMHQPDQYGQGSFPGMNQSGLMASSSPYSQPVNNSSGLMNTQAPPYSMAP
NMVNSSTASMGLADMMSPGESKLPLPLKADGKEEGTPQPESKSKDSYSSQGISQPPTPGN
LPVPSPMSPSSASISSFHGDESDSISSPGWPKTPSSPKSSSSTTTGEKITKVYELGNEPE
RKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYICVKEIGGLAQVNKNKKWRELATN
LNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTADTKKQPKLQPPSPANSGS
LQGPQTPQSTSSNSMADVQGDLKPPTPASTPHGQMTPMQGGRSGTVSVHDPFSDASDSSF
PKRNSMTPSAPYQQSMSMPDVMGRMPYEPNKDPFGGMRKVPGSSEPFMTQGQMPTSSVQD
VYNQSPSGALSGLGMGRQQFPYGAGYDRRHEPYGQQYPGQGPPSGQPPYGGHQPGLYPQQ
PNYKRHMDGMYGPPAKRHEGDMYNMQFGSQQQEMYNQYGSSYSGPDRRPIQGQYPYPYNR
ERVQGPGQMQPHGIPPPMMGGPMQSSSSEGPQQSMWATRNDMPYPYQNRQGPGGPAQAPP
YPGMNRTDDMLVPEQRINHESQWPSHVSQRQPYMSSPASMQPITRPPQSSYQTPPSLPNH
ISRAPSPASFQRSLESRMSPSKSPFLPSLKMQKVLPTVPTAQVTGPPPQPPPIRREITFP
PGSVEASQPVLKQRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVA
TFSLSQLSGFLELLVEYFRKCLIDIFGILTEYEVGDPSQKALDHNAGKRADGQSLADESG
KEEEGTECVDEEDDEEDDEEDDEEEDDGKTETEEKSSSTLASPNATADPKEKPRQASKFD
KLPIKIVKKNNLFVVDRSDKLGRVQEFNSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRR
PPPPLSSTGRKKEQEGKGDSDEQQEKSIIATIDDVLCARPGALPEDANPGTQTESGKFPF
GIHQAKSHRNIKLLEDEPRSRDETPLCTVAHWQDSLAKRCICVSNIVRSLSFVPGNDAEM
SKHPGLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTL
VTLANISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLET
LCKLSIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDALA
ARAIAVQKGSIGNLISFLEDGVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAM
ARVDENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL
NT seq
7335 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcgggcagcagcggcggcggcggcggcggcgcgggcgcgggcgggcagcggc
gagcggcgggcgccccccgggccgcggccggcgcccggggcccgggacctggaggcgggg
gcgcgcggcgcggcggcggcggcaccgggacccatgctggggggcggcggcgacggcggc
ggcctgaataatgtgcaccaccaccccctgcacccccgtcacgaactgaacatggcccat
aacgcgagcacggcggccgccgccgccagcactaacagcgccaagagcggcggctccgag
gcggctctcaaggagggtggaagcgccgccgcgctgtcctcctcctcctccgcggcggcg
gcggcggcggcggcgtcctcctcttcctcctcgtcgggcccgggctcggccatggagacg
gggctgctccccaaccacaaactgaaaaccgttggcgaagcccccgccgcaccgccccac
cagcagcaccaccaccaccaccatgcccaccaccaccaccaccatgcccaccacctccac
caccaccaccacgcactacagcagcagctaaaccagttccagcagcagcagcagcagcag
cagcaacagcaacagcagcagcagcagcagcagcaacatcccatttccaacaacagcctc
ggcggcgcgggcggcggcgccgctcagcccggtcccgacatggagcagccgcaacatgga
ggcgccaaggacagtgccgcgggcagccaggccgaccccccgggccagcctctgctgagc
aagccgggcgacgaggacgacgcaccgcccaagatgggggagccggcgggcggccggttc
gagcaccctggcctgggcgccctgggcgcgcagcagccgccggtcgccgtgcccgggggc
ggcggcggcggtggcggcggcggcggcccggcggccgtctcggagtttaataattactat
ggcagcgctgcccctgctagcggcggccccggcggccgcactgggccttgctttgatcaa
catggcggacaacaaagccccgggatggggatgatgcactccgcctcagccgccgccgga
gcccccaacagcatggaccccctgcagaactcccacgaagggtaccccaacagccagtac
aaccattatccgggctacagccggcccagcgcgggcggcggcggcggcggcggcggcggt
ggaggaggaggaggaggaggaggaggaggaggaggaggaggcggcggcagcggaggagga
ggaggaggaggaggagcaggagcgggagctgtggcggcggcggccgcggcggcggcggca
gcagcaggaggcggcggcggcggctatgggggctcgtcctcggggtacggggtgctgagc
tccccccggcagcagggcggcggcatgatgatgggccccgggggcggcggggccgcgagc
ctcagcaaggcggccgccggcgcggcggcggggggcttccagcgcttcgccgggcagaac
cagcacccgtcgggggccaccccgaccctcaaccagctgctcacctcgcccagccccatg
atgaggagctacggcggcagctaccccgactacagcagccccagcgcgccgccgccgccg
ccgccgtcgcagccccagtcccaggcggcggcggcggcggcggcgggggcggcggcgggc
ggccagcaggcggccgcgggcatgggcttgggcaaggacatgggcgcccagtacgccgct
gccagcccggcctgggcggccgcgcaacaaaggagccacccggcgatgagccccggcacc
cccggcccgaccatgggcagatcccagggcagcccaatggatcctatggtgatgaagagg
ccgcagttatacgggatgggcagtaaccctcattctcagcctcagcagagcagcccttac
cccggaggctcctacggtcccccagggccacagcgctatccaatcagcatccagggtcgg
accccaggggccatgggaggaatgcagtacccacagcagcagatgccgcctcagtatgga
cagcaaggcgtgagtggttactgccagcagggccagcagccttactacaaccagcagccg
cagcccccgcacctcaccccgcaggcgcagtatctgccgccccagccccagcagcggtac
cagccccagcaggacatgtctcaggaaggctatggaactaggtctcaacctcctttggct
cctggaaaacctaaccacgaagacttgaacttaatacaacaagaaagaccatcaagttta
ccagttgaagtcttgacctcggaggataccgcctttggactcaaggacctgtctggctcc
attgatgacctccccacgggaacggaagccactctgagctcagcagtcagtgcgtccgga
tccacgagcagccaaggggatcagagcaaccctgctcagtcgcctttctctccacacgca
tccccccatctctccagcatccccgggggcccgtcgccttctcccgtcggctctcccgtg
ggaagcaaccagtcacgatctggcccaatttctcccgcaagtattccaggcagtcagatg
cctcctcagccacctgggagccagtcagaatccagttcccatcctgccttgagccagtca
ccaatgccacaggaaagaggttttatggcaggcacacaaagaaaccctcagatgtctcaa
tatggacctcaacagacaggaccatccatgtcgcctcatccttctcctggaggccagatg
catcctggaatcagtagctttcagcagagtaactcaagtgggacttatggtccgcagatg
agccagtatggaccacaaggtaactactccagacccccaacgtatagtggggtgcccagt
gcgagctacagcggcccagggcccggcatgggcatcaatgccaacaaccagatgcacgga
caagggccaagccagccgtgtggtgctatgcccctgggacgaatgccatcagctgggatg
cagaacaggccgtttcctggaaatatgagcagcatgacccccagctctcccggcatgtcc
cagcagggagggccaggaatggggccaccgatgccaaccgtgaaccgtaaggcacaggag
gcagctgccgcagtgatgcaggccgctgcaaactcggcacaaagcaggccaccatacatt
aggtcgcctgcttatcccagccagtctggggctggcggacgccccatgttttcttcccag
caccccaactatggcaactctcaggctcccatgatgcaccagcctgaccagtacgggcaa
ggcagtttcccgggcatgaaccagagtggacttatggcttccagctctccctacagccag
cccgtcaacaacagctctgggctcatgaacacccaggcacccccctacagcatggcgccc
aatatggtgaacagctcaacagcatctatgggtcttgcagatatgatgtctcctggcgaa
tccaaattgcccctgcctctcaaagcagacggtaaagaagaaggcactccacagcccgag
agcaagtcgaaggatagctacagctctcagggtatatctcagcccccaacccccggcaac
ctgccagtcccttccccaatgtcccccagctctgctagcatctcctcatttcatggagat
gaaagcgatagcattagcagcccaggctggccaaagactccatcaagccctaagtccagc
tcatccaccaccactggggaaaagatcacaaaggtgtatgagttggggaatgagccggag
agaaagctgtgggtcgaccgataccttaccttcatggaagagagaggctcccccgtctcc
agtctgcccgcggtgggcaagaagcccttggacctgttccggctctacatctgcgtcaaa
gagatcggaggtttggcacaggttaataaaaacaagaagtggcgtgagctggcaaccaac
ctaaatgttggcacttcaagcagtgcagcgagctccctgaaaaagcagtatatccagtac
ctgtttgcctttgagtgcaagattgagcgcggggaggagcccccgccggaagtcttcagc
accgcggacaccaagaagcagccgaagctccagccgccctctcctgcgaactcagggtcc
ttgcaaggtcctcagaccccccagtcaaccagcagcaactcgatggcagacgtacaaggc
gacctgaagccacctaccccagcgtctaccccgcatggacagatgaccccaatgcaaggt
ggaagaagcggtacggtcagcgtgcacgacccgttctcagacgccagtgactcatcgttc
ccaaaacggaactccatgaccccgagcgccccgtaccagcagagcatgagcatgcctgac
gtgatgggcaggatgccctatgaacccaacaaggaccccttcggtggaatgagaaaagtg
cctgggagcagtgagccctttatgactcaaggacagatgcccactagcagtgtgcaggac
gtgtataaccagagtccctccggagcgctatccggtctgggcatggggcggcagcagttt
ccctacggagccggctacgaccgaaggcacgaaccttacgggcagcagtacccaggccaa
ggccctccctcaggacagccgccatatggaggacaccagcccggcctgtatccacagcag
ccgaattacaaacgccatatggacggcatgtatgggcctccggccaaacgccacgaggga
gacatgtacaacatgcagttcggcagccagcagcaagagatgtataaccagtacggaagt
tcctactccggaccggacaggaggcccatccaggggcagtatccgtacccctacaacaga
gagagggtgcagggccccgggcagatgcagccgcacgggatcccgcctcccatgatgggc
ggccccatgcagtcgtcctccagcgaagggcctcagcagagcatgtgggcgacgcgcaat
gatatgccttacccctaccagaaccggcagggccccgggggcccggcccaggccccgccg
tatccaggcatgaaccgcacggatgatatgctggtacctgagcaaaggatcaatcacgag
agccagtggccttcccacgtcagccaacgtcagccttatatgtcctctcccgcctccatg
cagcccatcacgcgcccgcctcagtcatcctaccagacgcctccatcactgccaaaccac
atctccagagcccccagccccgcgtccttccagcgctccctggagagccgcatgtctccc
agcaagtctccctttctgccctctctgaagatgcagaaggtcctgcccaccgtccccacg
gcccaggtcacgggcccgcccccccagccacccccgatccgaagggagatcaccttccct
cctggctcagtcgaggcatcgcagccagtcttgaaacaaaggcgaaagattacctcaaaa
gatatcgttactcctgaggcctggcgtgtgatgatgtccctcaagtccggtcttttggct
gaaagtacatgggctctggacaccattaacatcctcctgtacgatgacagcactgtcgcc
accttcagtctctcccagctgtccggatttctggaacttttagtagagtactttagaaaa
tgcctaattgacatttttggaattcttacggaatatgaggtgggagaccccagccaaaaa
gcacttgatcacaatgcggggaagagagctgacggccagtccttggccgacgagtctggg
aaagaggaggagggcaccgagtgtgtggacgaggaggacgacgaggaggacgacgaggag
gacgacgaggaggaggacgacgggaagacggagaccgaggagaagagcagctcgactctg
gcctctcccaacgccactgcggatccgaaggagaagcccaggcaagctagcaagttcgac
aagctcccgataaagatagtcaaaaagaacaacctgtttgtggtcgaccgatctgacaag
ctgggtcgtgttcaggagttcaacagcggacttctgcactggcagcttggtgggggggac
accaccgagcacatccagactcactttgagagcaagatggaaattcctcctcgcaggcgt
ccacctccccctctgagctccaccgggaggaagaaagagcaggaaggaaaaggcgattct
gacgagcagcaagagaagagcatcatcgcaaccatcgacgacgtcctctgtgctcggccg
ggggcgctgcccgaagacgcaaaccctggtacccagaccgagagcgggaagtttcccttt
gggatacatcaagccaagagtcaccggaacatcaagctgctggaggacgagcccaggagc
cgagacgagactcctctctgcaccgtcgcgcactggcaggattccctggccaagcgctgc
atctgtgtgtcgaatattgtccgtagcttgtcttttgtgcctggcaatgacgccgaaatg
tccaaacatccaggcttggtgctgatcctggggaagctgattctccttcaccacgagcat
ccagagaggaagcgagcgccgcagacctacgagaaagaggaagacgaggacaaaggggtg
gcctgcagcaaagacgagtggtggtgggactgcctggaggtcctaagggacaacacgctg
gtcacgttggccaacatttccgggcagctagacttgtctgcgtacacagaaagcatctgc
ctgccgattctggacggcttgctgcactggatggtgtgcccgtcggcagaggcacaagac
ccctttccaaccgtgggacccaactctgtcctgtcgcctcagagacttgtgctggagacc
ctctgcaaactcagtatccaggacaacaacgtggacctgatcttggccacgcctccattt
agtcgccaggagaaattctacgccacgttagttaggtacgttggggatcgcaaaaaccca
gtctgtcgagaaatgtccatggcgctcttatcgaaccttgcccaaggggacgcgctggca
gcaagggcaatagctgtgcagaagggaagcatcggaaacttgataagcttcctagaggac
ggggtcaccatggcccagtatcagcagagccagcataacctcatgcacatgcagccgccg
cctctagaaccacctagcgtggacatgatgtgcagggcggccaaggctctgctggccatg
gccagggtggacgagaaccgctcggaattccttctgcacgagggtcgattgctggatatc
tcgatatcagccgtcctgaactctctggttgcgtctgtcatctgtgatgtactgtttcag
attgggcagttatga
DBGET
integrated database retrieval system
