Lynx rufus (bobcat): 124528530
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Entry
124528530 CDS
T08475
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124528530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lruf03041
]
124528530
Enzymes [BR:
lruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124528530
Spliceosome [BR:
lruf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124528530
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
AAA_30
SecA_DEAD
Flavi_DEAD
nSTAND3
Cas3-like_C_2
SRP54
Motif
Other DBs
NCBI-GeneID:
124528530
NCBI-ProteinID:
XP_046958133
LinkDB
All DBs
Position
Unknown
AA seq
1044 aa
AA seq
DB search
MATPAGLERWVQDELHSVLGLSERHVAQFLIGTAQRCASAEEFVQRLRDTDTLDLSGPAR
DFALRLWNKVPRKAVVEKPARVAEREARALLEKNLSYKLLEDSEESSEETVGRAGSNVQK
KRKKRKHLRKKRQDEEEEEEQEVSEKEKRKTGGSKQLTEKPESEDEWERTERERLQDLEE
RDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLAK
REREKLEDLEAELADEEFLFGDVELSRHERRELKYKRRVRDLAREYRAAGEQEKLEATNR
YHMPEETRGQPARAMDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQKPKYQLVL
EEEETIEFVRATQLQGDEEPSGPPPPTQAQQKESIQAVRRSLPVFPFREELLAAIANHQV
LIIEGETGSGKTTQIPQYLFEEGYTKKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEV
GYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIK
DVARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVV
SVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQA
RIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKA
SANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMH
FDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCS
EEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQW
CYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRS
GYRTVKQQQTVFIHPNSSLFEEQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYK
AKELEDPHSKKMPKKIGKTREELG
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccagctgggctggagcgctgggtgcaggacgagctgcactcggtgttgggg
ttgagcgaacggcatgtagcccaatttctgatcggtaccgcgcagcgctgtgcctcggcc
gaggagttcgtgcagcgcctccgagacaccgatactctggacctcagcgggccggcccgg
gacttcgccctgagactctggaacaaggtaccacggaaggcagtggtagaaaagccagct
cgagtggcagagcgagaggcccgagccctgctagagaagaacctatcttataagttgctg
gaagacagtgaggagagcagtgaggagaccgtaggtagagctgggagcaatgtccagaag
aagcgtaaaaaacggaaacacctcaggaagaaacgtcaggatgaagaggaagaagaggag
caagaggtttctgagaaggagaagagaaagacaggaggaagtaaacagctgactgagaag
ccagagtcggaggatgagtgggagaggactgagcgagagcgccttcaggacctggaggaa
cgtgatgcctttgctgagagggttcgacagcgggacaaggatcggactcgaaatgtcctg
gagcggtcagacaagaaggcttatgaagaggctcagaagcgcctcaagatggctgaggaa
gaccggaaagccatggtccctgagctgcggaagaaatcccgccgagagtacttggctaag
agggaacgagagaaacttgaggatctggaggctgagctggctgatgaggagttccttttt
ggggatgtggagctgagccgacatgagcggcgggagctcaaatacaagcggcgagtgcgg
gacttggcccgagagtaccgggctgctggggagcaggagaagctggaggccaccaatcgt
taccatatgcctgaggagacccgaggacagccagcacgagctatggatctagtggaggag
gaatcaggtgcccctggggaggagcagcggcgctgggaggaggcccggctgggggcagcg
tccctgaaatttggggcccgagatgctgcctcccagaagcccaagtatcagctggtgctg
gaggaagaggagaccatcgagtttgtccgggccactcagctccagggtgacgaggagcca
tcaggcccaccacctccaacccaggctcagcagaaagagtccatccaggctgtccgccgc
agcctcccagtgttcccattccgtgaggagctcctggctgctattgctaatcatcaggtc
ctcatcatcgagggtgagacaggctccgggaagaccacccagatcccgcagtatctcttt
gaggagggttacacaaagaagggaatgaagattgcctgcacccagccccggagagtggca
gccatgagtgtggctgcccgagtggcccgggagatgggtgtgaagcttgggaatgaggtt
ggctatagcatccgctttgaggactgcacgtcggagcgaactgtcctccgctacatgaca
gatgggatgctcctccgggagttcctctctgaacctgaccttgcaagttacagcgtggtg
atggtagatgaggctcatgaacggaccctacacacagacattctctttgggttgatcaag
gatgttgctcgcttccggcctgagctgaaggtcttggtggcttcagccacactggacact
gcccgtttttccaccttctttgatgacgcccctgtcttccgaatccctggacgcaggttt
ccagttgacatcttctataccaaggctccagaggctgactacctggaagcttgtgtggtg
tctgtgctgcagatccatgtgacccagcctcccggggatatcctggtgttcctgacagga
caggaggagattgaggccgcctgtgagatgctccaggatcgctgccgccgcctgggctcc
aaaatccgggagctcttggtgttacccatttatgccaacctgccttctgacatgcaagct
cgaatcttccagcccacaccccctggggcacgaaaggtggttgtggcaacaaacatcgct
gagacgtcactcaccattgagggcatcatttatgtgctggatccagggttctgtaagcag
aagagctacaaccctcgcacaggcatggaatccctcactgtcacaccctgcagcaaggcc
tcagccaatcaacgagctggtcgggcgggtcgggtggctgcagggaagtgcttccgcctg
tataccgcctgggcctatcagcatgagctggaggaaaccactgtgccagagatccagagg
accagcctgggcaatgttgtgttgctgctcaagagcttagggatccatgacctaatgcac
tttgatttcctggaccctccaccatatgagaccctgctgctggccttggagcagttgtat
gctctgggagccctcaaccaccttggggagctcaccacgtctggtcgaaagatggcagag
ctaccggtggatcccatgctatctaaaatgatcttggcctctgaaaagtatagctgttca
gaagagatcctgacagtggctgccatgctctctgtcaacaattccatcttctacagaccc
aaggacaaggtcgtccatgccgacaatgcccgtgtcaactttttcctccctggtggggac
cacctggttctgctaaacgtttatacacagtgggctgagagtggttactcttcccagtgg
tgctatgaaaactttgtacagttcagatcaatgcgccgagccagggatgtgcgggaacag
ctggaggggctcttggaacgagtggaagttggtctcagctcctgccaaggggactatatt
cgtgtacgcaaggccatcacagctggttacttttaccacacggcacgactgactcgtagt
ggctatcgcacagtcaaacaacagcagacagtgttcattcaccccaactcctctctcttt
gaggaacagccacgctggctgctctaccatgaacttgtcttgaccaccaaggaattcatg
agacaggtattagagattgaaagcagttggcttctggaggtagctccccactattataag
gccaaggagctagaagatccccattctaagaaaatgccaaaaaaaataggcaagacacga
gaagagctagggtaa
DBGET
integrated database retrieval system
