Lynx rufus (bobcat): 124528664
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Entry
124528664 CDS
T08475
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
lruf
Lynx rufus (bobcat)
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lruf04131
]
124528664
Membrane trafficking [BR:
lruf04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
124528664
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
ATG2_CAD
RRM_fung
Motif
Other DBs
NCBI-GeneID:
124528664
NCBI-ProteinID:
XP_046958369
LinkDB
All DBs
Position
Unknown
AA seq
3172 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDTSQLTLGIWGGAVALKNLEIKENALSQLDVPFKVKVG
HIGNLNLTIPWKNLYTQPVEAVLEDIYLLIVPSSQIKYDPVKEEKQLLEAKQYELKRIEE
AKQKVADQEKHQVEKPDTFTEKLITQIIKNLQVKISNIHIRYEDDITNRDNPLSFGISLQ
NLSMQTTDQFWIPCLHDETEKLFRKLIRLDNLFAYWNVKSQLFYLNDYDESLDSLRNGIV
NKNIVPEGYDFVFRPISANAKLQMNRRSDFDFSAPKINLEVELHEIAIEFNKPQYFSIME
LLESVDMMTQNLPYRKFKPDVPLHYHAREWWTYAIHGILEVNVCPRLRMWSWKYIREHRQ
KMKQYKELYKKKITTKKPTGELLLSLQELEKILDVFNITISRQQAEVEVKKAGYRIYREG
AKDSEDNKGWFSWLWTWSEPRSKEQPDVKPGILEEMLTPEEKVLLYEAIGYSETAVDPTL
PKTFEAMKFFVHLKSMSIVLREKRETPELLDIVVEEFSTLIVQRPGAQAIKFETKIDSFH
VTGLPDNSTKPHLLSSLDDATSLFQIIFEINPLDETAAQRCIIEAEPLEMIYDARTVNSI
VEFFRPPKEVNLAQLTSATLIKLEEFRDKTATGLLYIIETQKVLDLKIDLKASYVIIPQD
GIFSPTSNLLILDLGHLKVTSKSRLELPDMKQGGARLEEIMHRAYDSFDVQLTSIQLLYS
TVGDNWKEARKLNVSTQHILIPMHFNVELAKAMVFMDIRMPKFKIFGKLPLISLRISDKK
LQGILELIESIPKPTPATETYAPVKPFQIQRSTSLGTSQISQKVLPFLELPCVEDDSEEE
FFDALCSPLEEPPQSPTGVKSCQQKKFQKPDYTKNMIQYKIRFEVPEVLIQFYHLVGDCE
LPVVEIDVLGLGTDVELRTFDLKANAFLKEFCLKCPEYFDENKKPVYLITTLDNTMEDLL
TLEYVKAEKNLPNLKSTYNNVVQLIKVNFSSLDIHLHTEALLNTINYFNNVLPQLEEKRA
SVSVAETEDKGEVIKKMSLKLPKNEDIITLQILAELSCLQIFIQDQKRNISEIKIEGLDS
EIIMRTSATEINAKLRNIIVLDSDKTALYKKAVYITGKEVFSFKMVSFVDATAGSAYTDM
NVVDVQVTLTVGCIEVVFVTKFLCSILAFIDNFQAAKQALAEATVQAAGMAATGVKELAQ
RSSRMSLDVNIKAPVVVIPQSPVSENVFVADFGLITMTNTFHIITESQSNPPPIIDLITI
RLSEMRLYRSQFIDDTYQEVLDLLLPLNLEVIVERNLSWEWYQEVPCFNVNAQLKPMEFI
LSQEDLTTIFKTLHGNVWYEEGYGASPAGVKDEHSITSGASNASHHLEGTTVVTAAVVEI
HSQASQVKTTLNMSFKTDYLTMVLYSPSPEQTSFTDVRDPALKLAEFKLENIISTAKMYT
DDSVFSSFSLKNCILDDKRPHVKKATPRMIGLTVGFDKKDMMAVKYRKVRDGLVTDLVLQ
EMYICASVEFLLTVANVFLEAFTTGTAIETSVQTWTAKEEVPVQEKEKWEVNIIIKNPEI
VFVADMTRSDAPALVITTQCEICWKGDRENSTMTAAIKDLQVRACPFLPVKRKGRITTVL
QPCDLFYQATQISANPQVIDISVKSLTLKVSPVIINTVITITSALYTSKETIPEDTASST
AHLWEKKDTKSLKMWFLEEPNEVENKAPTTELILRGEIIRVNIDSIFIVLEAGVGHRTVP
MLLAKSRFSGEGKNWSSLINLYCQLELEVHYYNEMFGVWEPLLEPLEIDQTEDFRPWNLG
IKMKKKAKMAIVESDTEEENYKVPEYKTVISFHSKDQLNITLSKCGLVMLNNLAKAFTEA
ATGASAVIIRDLAPFMILNSLGLPVSVSPSDSFSVLNVPLARSYVLKNEESLSMDYVGTK
DNDHFNAMTSLSSKLFFILLTPTNHSTADKIPLTKVGRRLYTVRHRESGVERSIVCQVDG
VEGSKKVTIRSPVQIKNHFSIPLSVYEGDTLLGTASPGSEFNIPLTSYRSPLSLKPEDED
YEVCERIDFEEIIKNEGTLLKKICRSINAAKKPFIINVVPEKDNLASLSVYSEDGWDLPY
IMHLWPPILLRNLLPYKIAYYIEGIEHRVYTLNEGQSAHICTAQLDKARLHLKLLDYLNH
DWKSEYCIKPNQQDISFINFTCVTEIEKTDLDIAIHVTYNIGQTVVAFHSPYWMVNKTGR
MLQYKADGIHRKHPPNYKKPILFSFQPKHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAV
KCKGLKMEYQVGVTIDLSSFNITRIVTFTPFYMIENKSKYHISVAEEGNDKWLSLDLEQC
IPFWPEDASNALLVQVERNQGPPKKIHFNKQENCILLRLDDELGGVIAEVNLAEHSTVIR
FSDYHDGAATFLLINHTKSDIVQYNQSSLGEIEDSLPPGKAVFYTWADPVGSRKLKWRCG
KSHGEVTQKDDMMTPINLGKKTIYLVSFFEGLQRIILFTEDPRVFKATYESEKAELAEQE
IVLALQDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKARWKPMSIKHTEKLEKEFKE
YTESSPSEDKVIELDTNIPVRFTPSGTNMKILQPHVIAIRRNYLPALKVEYSTSAHQSSF
RIQIYRIQIQNQIHGAIFPFVFYPIKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISRIKY
FKVLIQEMDLRLDLGFVYALAELMTEAEVTEKTEVELFHKDIEAFQEEYKTASLVDSSQV
SLYEYFHISPIKLHLSVSLRSGREEAKDTEKQEGLMAVHSLNLLLKSIGATLTDVQDVVF
KLAFFQLNYQFHTASELQSEVIRHYSKQAIKQMYVLILGLEVLGNPFGLIREFSEGVEAF
FYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITNAMAKGVAAMTMDEDYQQ
KRREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLV
GAVARPTGGIIDMASSTFQGIKRATESSDEVESLRPPRFFNEDGVIRPYRLRDGTGNQML
QVMENGRFAKYKYFTHVMINKTDMLMITKSGVLFVTKGTFGQLTCEWQYSFDEFTKEPFI
VHGRRLRIEAKERVKSVFHAKEFGKIINFKTPEDARWILTKLEEAREPSPRF
NT seq
9519 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcggtggtcgtggatgtgttgaaccggttcttgggggactatgtggtg
aacctggacacgtcccagctcactctgggcatctggggaggagctgtggccttgaagaat
cttgaaattaaagaaaatgctctgagtcaactggatgtaccatttaaagttaaagttggt
catataggtaatcttaatcttacaattccatggaaaaacctgtatactcaaccagttgaa
gctgtcctggaagacatttatttactcatagtgccttcttctcaaataaaatacgatcct
gtaaaagaagaaaaacaactcttggaggcaaagcaatatgaacttaagcgaatagaagaa
gcaaaacaaaaagtagctgatcaagaaaaacatcaggtggagaaaccggacactttcaca
gaaaaattaattactcagatcataaaaaatcttcaagtgaaaatttccaacatccatatt
cgttatgaagatgatatcacaaatcgagacaatccattgtcatttggtatttcccttcaa
aatctcagcatgcagacaactgatcaattctggattccatgtttacatgatgaaactgag
aaactctttcgtaagttaatccgattggataacctttttgcctattggaatgtgaagtct
cagttgttttaccttaatgattatgatgaatcattggacagcttgaggaatggtattgtc
aataaaaatattgttccagaaggttatgattttgtgtttcgccccatatctgctaatgcc
aaacttcagatgaatcggcgatcggattttgacttctctgcacccaagataaacctggaa
gttgagttacatgagatagcaattgaatttaataaaccacagtatttcagcattatggag
cttcttgagtcagttgatatgatgacgcaaaatctgccatataggaaattcaaacctgat
gtacctcttcactatcatgccagagaatggtggacttatgctatacatggtattctggaa
gtaaatgtctgcccccggttacggatgtggtcatggaagtatattagagaacacaggcaa
aaaatgaagcagtataaagaactgtataaaaaaaagataacaactaaaaagccaacgggt
gaacttctcctctctttgcaggagttggaaaagatcttggatgtatttaatataactata
tcaagacaacaggcagaagttgaggtaaagaaagctggatacaggatttacagagaagga
gcaaaagattcggaggataataaaggatggtttagctggctgtggacttggtcagaacca
agaagtaaagaacagccagatgttaagcctggaattcttgaagaaatgttgacacctgaa
gaaaaagttttactctatgaagcaattggctacagtgaaacagcagttgatccaaccttg
cctaaaacatttgaagccatgaagttttttgttcacttgaaaagtatgtctattgttcta
agagaaaaacgagaaacacctgaactgttagatattgtagtggaagaatttagcactttg
atcgtgcaaagaccaggagcacaagcaattaaatttgaaaccaaaattgattcatttcat
gtcactggcttaccagataattcaacaaaacctcacctcctttcttccttggatgatgct
acgtcactcttccaaattatatttgagataaatccgttagatgaaactgctgctcaaagg
tgtatcatagaagctgaacctttagaaatgatatatgatgcaagaacggtgaatagtata
gtggaatttttcagacctccaaaagaggtaaatctagcacagctcacttcagcaactttg
attaaacttgaagaatttcgtgacaagacagcaacaggtctactatatattattgaaaca
cagaaagttcttgatctcaaaattgatttgaaggcttcatacgttattatcccacaggat
ggaatttttagccctacgtcaaatttacttattttggatcttggtcatctaaaggtgaca
agtaaaagtcgtttggagttaccagatatgaaacaaggtggggccaggcttgaagagata
atgcatagagcttatgattcctttgatgttcagcttacaagcatacagctgctttacagc
acagttggtgataattggaaagaagctcgaaaacttaatgtatctacacaacatattttg
atacctatgcacttcaatgtggaacttgctaaggccatggtttttatggatataaggatg
cccaaattcaagatatttggaaagttaccactgatttctttacgaatctcagataaaaaa
ctgcaagggattttggaattgatcgaaagcattccgaaacccacacctgcaactgaaaca
tatgcccctgtcaaaccatttcagattcaaaggtcgacttctttgggaacatcacagatt
tcacagaaagtgcttcctttcctggaacttccatgtgtcgaagatgattcagaggaagaa
ttttttgacgcactgtgtagtcccttggaagagcctcctcagtctcccactggagttaaa
agttgtcaacagaaaaagtttcaaaagccagattatacaaaaaatatgattcagtataaa
ataagatttgaagtgccagaggttttgattcagttttatcaccttgttggagattgtgaa
ctacctgtggtagaaattgatgttttaggactgggcacagatgttgagcttagaacattt
gatttgaaagcaaatgcctttttgaaagagttctgcttaaaatgcccagaatactttgat
gaaaacaagaaaccagtttatttgattacaacgctggataatacgatggaagatctgctg
acactggagtatgtgaaggcagaaaagaatctacctaatttgaaaagtacttacaacaat
gttgtgcaactaattaaggtgaatttttcctctttggatattcatttacatactgaagca
cttctgaatacaataaactactttaataacgtactcccacaactagaagaaaaacgagcc
tctgtgtctgttgcggagactgaagacaaaggagaggtcattaaaaaaatgtctttaaaa
ctacccaagaacgaagatattattaccttgcagattttggcagaattatcttgtttacag
atctttattcaagatcagaaacgtaacatttctgaaattaagattgaagggcttgattct
gagataataatgaggacttcagccactgaaataaatgcaaagctaaggaatataattgtc
ttggattctgataaaacagctttatacaaaaaggccgtttacatcactggaaaagaagtt
ttcagcttcaaaatggtctcttttgtggatgcaactgctggttctgcatacacagatatg
aacgtggttgatgttcaagttactttaactgttggttgtattgaagtagtttttgtcaca
aaatttctatgttctatattggcttttatagataattttcaagcggctaaacaagctttg
gctgaggctactgttcaggcagcaggaatggcggctactggtgtaaaagaactggcacag
aggagttctagaatgtcattggatgttaacatcaaagccccagtggtggtcatcccacag
tctccagtttctgaaaatgtttttgttgctgattttggactaattacaatgacaaataca
ttccatataataacagagagccagagcaaccccccacccattattgatttgataacaata
aggctgagtgaaatgcgactatacaggtctcaatttattgatgatacataccaggaagta
ctggatctgctactgccattaaatcttgaggtgattgttgaacgaaatttatcttgggag
tggtaccaggaagttccttgttttaatgtaaatgctcagctaaagcccatggagttcatt
cttagtcaagaagatttaacaactatttttaagacattacatggcaatgtatggtatgaa
gaaggttatggtgcctcacctgcaggagtaaaagatgaacatagtattactagtggagct
agtaatgcttcacaccatttagaaggaacaactgtagtgacagctgctgtggtagaaata
cattcacaggcctctcaagttaagacaacgctaaatatgagtttcaaaactgattatctc
accatggtactatatagtccaagtcctgagcagacttcctttacagatgttcgtgatcct
gctctgaaacttgctgaatttaagttggagaatattataagtactgcaaagatgtataca
gatgactcagtattttcttccttctcattaaaaaactgtattttagatgataaaagacct
catgtcaagaaggcaactcctagaatgataggactgacagttgggtttgacaaaaaggac
atgatggctgtaaagtataggaaagtcagagatggtttggtgactgatttagtccttcaa
gagatgtatatttgtgccagtgtagaatttctcctgacagttgcaaacgtctttcttgag
gccttcaccacaggcacggctatagaaaccagtgttcaaacatggactgctaaggaagaa
gtacctgtacaggaaaaagagaaatgggaagttaatattattattaaaaatcctgaaatt
gtgtttgtggctgatatgacacgaagtgatgctcctgccttagtcattacaacacaatgt
gaaatttgttggaaaggtgaccgtgagaacagtacaatgactgctgccattaaagatctt
caagtgagagcatgcccatttcttccagtcaagagaaaaggcagaatcactacggttttg
cagccctgtgacttattctatcaagctactcaaataagtgcaaatccacaagtgattgat
atatcagtaaaatccttgacactgaaggtttcaccagttatcataaatactgtgattacc
ataacgtcagcactttatacatctaaggaaaccatccctgaggatactgcttcttctaca
gcacatttatgggaaaagaaggatactaagagtttaaaaatgtggtttcttgaagaacca
aatgaagttgaaaacaaagctcccacaactgaattgattctcagaggagagatcataaga
gtgaacattgattctatttttatagttcttgaggctggagttggtcacagaacagtgcct
atgctgttagcaaagtcacgtttttcgggggaaggcaaaaactggagttccttgataaat
ctatactgtcagcttgaattagaagtccattattacaatgaaatgtttggtgtatgggag
cctttgcttgaacctttagaaattgatcagactgaggattttaggccatggaatcttgga
atcaagatgaaaaagaaagcaaaaatggctattgttgagtcagatactgaagaagaaaat
tacaaagtgccagaatataaaactgttatcagtttccattcaaaagaccaactaaacatt
acgttatccaaatgcggccttgtaatgttaaataatttagccaaggcatttacagaagcc
gccactggagcttcagctgtcatcatacgggatctagcgccatttatgattttaaattct
cttggacttccggtctctgtttcaccaagtgattcttttagtgtactcaatgttccattg
gcaagatcctatgtattgaaaaatgaagagagtttaagtatggattatgtgggaactaaa
gacaatgatcatttcaatgcaatgaccagcctaagcagtaaactcttctttattcttctt
acacccactaaccactctactgctgataagattcctttaacaaaagtgggacgacgactg
tacaccgtaagacacagagagtctggggttgaaagatctattgtttgtcaagtcgatgga
gtggaaggaagtaagaaggtaacaattcgttctccagtgcagattaaaaatcatttttca
attccactttctgtttatgaaggggacactttattgggaacagcttcacctggaagtgaa
ttcaacataccattaacatcttaccgatcacctctttctctgaagccagaagatgaggac
tatgaagtgtgtgaaagaattgactttgaagaaattataaaaaatgaaggcactcttcta
aagaagatatgtagatctataaacgctgctaagaaaccgtttattattaatgttgtccca
gaaaaagataatttggcatctctctccgtgtattcagaagatggttgggacttaccatac
ataatgcatttgtggccgcctatcctcctccgaaatcttcttccttacaaaattgcttat
tatatagaggggattgaacacagagtttatactctaaatgaaggacagtcagcccatatt
tgtactgcgcagttggataaagccagactacatttaaaattacttgactatcttaatcat
gattggaaaagtgaatattgtataaaacctaatcagcaagatattagtttcatcaatttc
acctgtgttacagaaatagaaaagactgatttagatattgctatccatgtaacttacaat
attggccagaccgttgtggcatttcatagtccttattggatggtcaataaaactggtcga
atgttacagtataaagcagatggaattcatcgaaagcatccacctaattacaaaaaaccc
attcttttttcttttcaaccaaagcatttttttaataacaataaggttcagcttatggta
actgatagtgaattgtcagatcagttttcaattgatactgttgggagtcatggagctgtt
aaatgtaaaggcctgaaaatggagtatcaagttggtgtcactatagacctcagcagtttt
aacattaccagaattgtgacttttacccctttttatatgattgaaaacaaaagcaaatac
catatatcagtggctgaagagggaaatgataaatggctctctcttgatttagagcagtgt
attcccttttggcctgaggatgcttctaatgcactgcttgttcaagttgaaagaaatcaa
ggccctcccaaaaagatacattttaacaagcaagaaaattgtattttattgcgtctggat
gatgagcttggaggtgttatagcagaggttaatttggctgaacattctacagttattaga
ttttcagattatcatgatggagcagctacattcctgttaataaatcacaccaagagtgac
attgttcagtacaaccaaagttctctcggtgaaatagaagattccctccctcctggaaaa
gcagtattttatacatgggctgatccagtgggctctagaaagctgaagtggagatgtgga
aaaagccacggtgaagtaacacaaaaggatgatatgatgacacctataaatttggggaaa
aagaccatttatttagtttcattctttgaaggcttacagcgcattattttattcactgaa
gatccaagggtatttaaagcaacatatgaaagtgagaaagcagagttagcagagcaagaa
attgtgctggccttacaagatgttggaatttccctcgtcaacaattacacaaagcaagaa
gtagcctatattggcattacaagttctgatgtggtttgggagacaaagcccaagaagaag
gcaagatggaagccaatgagtataaagcacactgagaagttagaaaaagaatttaaggaa
tatactgaatcttcaccttcagaagataaggttattgagttggacactaacattccggtt
cgcttcacacctagtggcactaacatgaaaattctgcaaccacatgtaatagccatacga
agaaattatcttccagcattaaaagtagaatatagcacatctgcacatcagtcatcattt
agaattcaaatttacagaatacagatccaaaaccagatacatggtgctatatttcctttt
gtgttttatccgattaaacctcccaagtcggtcaccatggattcagctccaaaacccttc
acagatgtcagtattgttatgagatctgcaggccattcccagatttcacgtattaagtac
ttcaaggtgttgatccaagaaatggatctcaggttagatcttgggtttgtctatgcttta
gcagaacttatgacagaagcagaagtgactgaaaaaacagaggttgaactttttcataaa
gatatagaagctttccaagaagaatataaaacagcttcattagtagattcatcacaagtc
agtctttatgaatactttcatatatctcccatcaagttgcacttaagtgtttcactgcgt
tcgggtagagaagaagctaaagatacagaaaaacaggaaggactgatggcggttcattcc
ttaaatcttctgctgaagagtattggtgcgactcttacagatgtacaagatgtagttttt
aagcttgcattttttcaactcaactatcagttccatacagcatctgaactacaatctgaa
gtaataagacactattcaaaacaggccattaagcaaatgtacgtactcattcttgggctt
gaagttttgggaaatccctttggcttgattagagaattttctgaaggtgtggaagcattt
ttttatgaaccttaccagggagccatccagggtcctgaagagtttgtggagggcatggcc
ctaggactaaaggcactagttggtggagctgtcggtggattagctggtgctgcctctaaa
atcaccaatgctatggcgaaaggggtggcagctatgactatggatgaagactaccaacag
aagagaagagaagccatgaataagcaaccagcgggtcttagagaaggcatcactcgtgga
ggaaaaggcttagtttctggttttgtaagtggcataacaggaattgttacaaaaccaatc
aaaggagctcaaaaagaaggagcagctggtttcttcaaaggtgttgggaaaggtttagtt
ggagcagtggcaaggccaaccggaggcatcatagacatggctagcagtacatttcaggga
ataaaaagagctacagagagttctgatgaagtggagagcctgcgaccccctcgattcttt
aatgaggatggagttatcagaccttacaggttgagggatgggactggcaaccaaatgtta
caggtcatggaaaatggaagatttgcaaaatacaagtattttacccatgtcatgatcaac
aaaacagatatgttaatgataactaaaagcggtgtcttgtttgtaacaaaaggaacattt
ggacagcttacatgtgagtggcagtatagttttgatgagtttaccaaagagcccttcatt
gttcatgggagaagattacgcattgaagcaaaggaacgagtgaagtctgtatttcatgcc
aaagagtttggaaaaataattaacttcaagaccccagaagatgctaggtggatcctcacg
aaactagaagaagcaagagaaccttccccgagattctga
DBGET
integrated database retrieval system
