Leptotrichia rugosa: AB8B22_04850
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Entry
AB8B22_04850 CDS
T10901
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lrug Leptotrichia rugosa
Pathway
lrug03410
Base excision repair
lrug03430
Mismatch repair
lrug03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lrug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AB8B22_04850 (recJ)
03430 Mismatch repair
AB8B22_04850 (recJ)
03440 Homologous recombination
AB8B22_04850 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrug03400
]
AB8B22_04850 (recJ)
DNA repair and recombination proteins [BR:
lrug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AB8B22_04850 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AB8B22_04850 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB8B22_04850 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF5677
Toprim
Motif
Other DBs
NCBI-ProteinID:
XDU67744
UniProt:
A0AB39VI23
LinkDB
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Position
994585..996126
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AA seq
513 aa
AA seq
DB search
MSENDLLDPFLFENMEKVVERIKVAKLKKEKIVIYGDYDVDGISGVAYLVIMLRKLGLNI
DYYIPNRVHEGFGINRSTLNFLKRRDTKLFITVDISINSREEIMLLKKNGIDIIVTDHHR
QTTICDEMEILTINPKISKSYPNKYLSGAGVAFKVACAIYERFGMSKKILYEYLDIVMIG
TVADVVPMVNENRFIIKKGLNNIKKTKIKGLKYIINYLKINPKNITTSDIGFLIAPIFNA
LGRIDNSKIVVNFFIQEDDFKLISIIEEMKKANKIRRYLENEIYNEIEEKIQRLNRPKYI
FMKSRSWHSGVVGVVCSRISIKYNIPVILVSIKNGYGKASCRSIEGINIFDMLKEISTKL
ERFGGHDLAAGFLVSEKYLFEVERYLRQRLVRKNREDVEKILNVDSWLNIKSINKKKLCD
INRLAPFGLDNPEPNFIDTEVEFIGISKFGINNRHFKGFAKKNDRVISVIGYNLGHKLKA
KSENERKYRVIYTPIFKSVHSDLYIELRIKDFI
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaaatgacttactagatccatttttgtttgaaaatatggaaaaagtcgttgaa
agaataaaagtggcaaaattaaaaaaagaaaagattgtaatttacggagattatgatgta
gatggaatttcaggagtcgcgtatttagttattatgctaagaaaattgggattaaatatt
gactactatattccaaatcgtgtgcatgagggttttggaataaatagatccacgctgaat
tttttgaagcgaagagatacaaaattatttattacagttgacatttctataaatagtcgt
gaagaaataatgctgttaaaaaaaaatggaattgacataatcgtgacagaccaccacaga
caaacaaccatttgtgatgaaatggaaattttgacaattaatcccaaaataagtaaaagt
tatccaaataaatatttatctggagctggagtcgcctttaaagtggcttgtgccatttat
gagagatttggaatgagtaaaaagatactttatgaatacttggatattgttatgattggg
acggttgcagatgtagttccgatggtcaatgaaaatagatttattataaaaaaaggatta
aataatataaaaaaaacgaaaataaaaggtttaaagtatattattaattatttgaaaata
aatccgaaaaatattacgacaagtgatattggatttttgattgcaccaatttttaatgct
cttggaagaattgacaactcaaaaattgtagtaaacttttttattcaggaagatgatttt
aaattgatttccattattgaagaaatgaaaaaagctaataaaatacggcgttacttggaa
aatgaaatttacaatgaaattgaagaaaaaatacaaaggttaaacagacccaaatatatt
tttatgaaaagcagaagttggcattctggcgttgttggtgtcgtttgctcaagaatttcc
ataaaatataatatacctgtcattttagtttcaataaaaaatgggtacggaaaggcatct
tgccgaagtattgaaggaattaatatttttgatatgttaaaagaaatttctacaaaattg
gagcggtttggaggacatgatttggcggctggttttttggtttcggaaaaatatcttttt
gaagtggagagatatttgcggcaaagattggtcagaaaaaatcgggaagatgtggaaaag
attttaaatgtggattcttggttaaatattaaaagtattaataagaaaaaattatgtgat
ataaatagacttgctccatttggcctagacaatccagagccaaattttattgacacagaa
gtcgaatttataggaatttcaaaatttggaataaataatcggcactttaaaggatttgcc
aaaaaaaatgacagggttatttctgtgattgggtataatttggggcataaattaaaagct
aaaagcgaaaatgaaagaaagtaccgagttatttatactccaatatttaaatcggttcat
tctgatttgtatatcgaactcagaataaaagatttcatttaa
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