Leptotrichia rugosa: AB8B22_09935
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Entry
AB8B22_09935 CDS
T10901
Name
(GenBank) ribonuclease R family protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lrug Leptotrichia rugosa
Pathway
lrug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB8B22_09935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrug03019
]
AB8B22_09935
03016 Transfer RNA biogenesis [BR:
lrug03016
]
AB8B22_09935
Enzymes [BR:
lrug01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AB8B22_09935
Messenger RNA biogenesis [BR:
lrug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB8B22_09935
Transfer RNA biogenesis [BR:
lrug03016
]
Prokaryotic type
tRNA degradation factors
AB8B22_09935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
OB_HELZ2
DUF7634
Rho_RNA_bind
NTE_Ploop
Motif
Other DBs
NCBI-ProteinID:
XDU67838
UniProt:
A0AB39VJC7
LinkDB
All DBs
Position
complement(1941645..1944038)
Genome browser
AA seq
797 aa
AA seq
DB search
MEMREKKSKKNKKEVEKFKENKNESKKEKKNKSEKKERKDNKFFGKKVLKKNESENEKIK
KFEEREEKELKYLKKVLAEYEFNFQEILQLLEWSPKKRKIYKMLLNHWEEKGEIFLKRNG
KYTLPEKEGFLRGEISIGNGNFGFLDILGEHSVFIPGAYLNTAMDGDTVLVRILKESSSS
KKREGEVVNVIKRNREIIVGIFEHNLSFGFVRPKNSPSDIYIPKKFIKGAKTGDLVAVKI
DFWGDDTRKPEGEIVSVLGNPQDTEVLISSLLLNEGIEEKFSNEVLKELDKIDEDFTNEL
SNRKDLRNLDIITIDGADAKDLDDAVYVEKKEDRYKLIVSIADVSHYVGENTALDSEALK
RGNSIYLVDRVIPMLPRKLSNNLCSLNPNEDKLTFSVEMEIDFKGKVVKNNFYKSVIRSK
YRMTYDDVNKIFDYQRDKKSEKNGKNEKNENLSEEKKEIFFENKKVFERYEKISEMLKNM
LELSKIIRANKKRRGSIDFELPEIKVVLDENKLVKDIKLRSRGEAEKLIEDFMVIANETV
AEKLFWEETPAIYRVHEDPDKAKIQALNETLIKFGYSLKNMDEIHPGKFQNIINKTTGLP
EGYLIHKLILRAMQRARYANKNLGHFGLASKYYLHFTSPIRRYSDLVVHRMLGRSIERFI
NEREKTKYLSDFEVIASNISKTERIADKLEEDSVKIKLIEYMQDKIGETFIARLSRMNKN
KIFMELENHIEVVYNITSSRDNFIYDEENFKIINKRTNESFTMGNTLKVSVVSASYEKME
IEVIPFEEEKSEINLEN
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggagatgagagagaaaaaatctaaaaaaaacaaaaaagaagtagagaaatttaaagaa
aataaaaacgaaagtaaaaaagaaaagaaaaataaaagtgagaaaaaagaaagaaaagac
aataaattttttggaaaaaaagttttgaaaaaaaatgagagtgaaaatgaaaaaataaaa
aaatttgaggaaagggaagaaaaagaactgaaatatttaaaaaaagtattggcggaatat
gagtttaattttcaagaaattttgcagctcttggagtggagtcccaaaaaaagaaaaatt
tataagatgttattaaatcattgggaagaaaagggagaaatctttttaaagagaaatgga
aagtacactttgcctgaaaaagaaggatttttgcgaggagaaatttcgattggaaatggg
aattttggatttttggatattttaggagaacacagcgtgtttattcctggcgcatatttg
aacacggcaatggatggcgacacagttttggtacgaattctgaaagaaagcagcagttct
aaaaaaagagagggcgaagttgtaaatgtaattaagagaaacagagagattatagttggg
atttttgagcataatttgagctttggctttgttcgtccaaaaaattctccaagcgacatt
tacattccgaaaaaatttataaaaggtgcaaaaactggggatttggttgctgtaaaaatt
gatttttggggagacgatacacgaaaaccagaaggagaaattgtgagtgtcttgggaaat
ccgcaagatacagaagttttgatttcgtcgttgcttttaaatgagggaattgaagaaaag
ttttctaatgaagttttaaaagaactagataaaattgatgaagattttacaaatgaactt
tcaaatagaaaagatttgcgaaatcttgacatcattacgattgacggagcggatgcaaaa
gatttggatgatgccgtgtatgttgaaaaaaaagaagatagatacaaacttattgtaagt
attgccgatgtttctcattatgttggcgaaaatactgcacttgacagtgaagcactaaag
cggggaaattcgatttatcttgtggacagagtaattccaatgcttccaagaaaattgtca
aacaacctttgttcgcttaatccgaatgaagataaactgactttctcggttgagatggaa
attgattttaaaggaaaagttgtaaaaaataatttttataaatcagttataaggtccaaa
tatcgaatgacttacgacgatgtgaataaaatttttgattatcaaagagataaaaagagt
gaaaaaaacggaaaaaacgaaaagaatgagaatttgtctgaagaaaaaaaagaaatattt
tttgaaaataaaaaggtttttgaaagatatgaaaaaatttcggaaatgctaaaaaatatg
ttggaactttctaaaataattcgtgcgaataaaaagagaagaggaagcattgattttgaa
ctgccagaaataaaagttgtgctggatgaaaataaacttgtgaaagacattaagcttcgt
tctcgtggggaagctgaaaagttaattgaagattttatggtaattgcaaatgaaactgtg
gcagaaaaattattttgggaagaaactccagcgatttacagggttcacgaagatccagac
aaggctaaaattcaagcgttaaatgaaacgcttataaaatttgggtattcactaaaaaat
atggatgaaattcatcctggaaaatttcaaaatattataaataaaacaacgggactgcca
gaaggatatttgattcacaagttaattttacgggctatgcagcgggcaagatatgcgaat
aaaaatcttggtcattttggtttggcttctaaatattatttgcactttacttcgccaatt
aggcgatattcagatttagttgtccacaggatgcttgggcgttcgattgaaagatttata
aatgagcgagagaaaacgaaatatttatccgattttgaagtgatagcaagtaatatttcc
aaaactgagcgaattgccgataaattggaagaagatagtgtaaaaattaaattaattgaa
tatatgcaagataaaattggtgaaacgtttatagctagacttagcagaatgaataaaaat
aaaatatttatggaacttgaaaatcatatagaagttgtctataatattacaagttcacgg
gataatttcatttatgatgaagaaaattttaaaattataaataaaaggacaaatgagagc
tttacgatgggaaacacgctaaaagtgagtgttgtgagtgcaagttatgaaaagatggaa
attgaagttattccgtttgaagaagaaaaaagcgaaataaatttagaaaactag
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